Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.49884	Ube2d3	ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	3		66105
Gene Ontology	ligase activity | ubiquitin conjugating enzyme activity | ubiquitin cycle | ubiquitin-dependent protein catabolism | ubiquitin-protein ligase activity
Human Homolog	UBE2D3[ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 116 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCAATAAAGG 9.8 0.0098 P8 Cb GC AATGAATAAA (2) 4.9 0.0049 P8 Cb GC TGATGCTACC 4.9 0.0049 P8 Cb GC ATTCTGGCAG 3.3 0.0033 P8 Cb GC TTTTGTGTTC 3.3 0.0033 P8 Cb GC TATGAGACCT (2) 1.6 0.0016 P8 Cb GC TCTTTAGAGT 1.6 0.0016 P8 Cb GC TTAAGTCACC (2) 1.6 0.0016 Cb medulloblastoma TTTTGTGTTC 6.9 0.0069 Cb medulloblastoma AATGAATAAA (2) 4.6 0.0046 Cb medulloblastoma ATTCTGGCAG 4.6 0.0046 Cb medulloblastoma TCAATAAAGG 4.6 0.0046 Cb medulloblastoma ATCAGTGTCT (2) 2.3 0.0023 Cb medulloblastoma CCTTCTGAAG 2.3 0.0023 Cb medulloblastoma TAACCTCAAA 2.3 0.0023 Cb medulloblastoma TTAAGTCACC (2) 2.3 0.0023 P8 GC+1d culture TCAATAAAGG 10.3 0.0103 P8 GC+1d culture TATGAGACCT (2) 3.4 0.0034 P8 GC+1d culture ATTCTGGCAG 2.3 0.0023 P8 GC+1d culture CCTTCTGAAG 2.3 0.0023 P8 GC+1d culture AATGAATAAA (2) 1.1 0.0011 P8 GC+1d culture ATCAGTGTCT (2) 1.1 0.0011 P8 GC+1d culture CTCATCTGAG (4) 1.1 0.0011 P8 GC+1d culture TGATGTTCAC 1.1 0.0011 P8 GC+SHH+1d culture TCAATAAAGG 4.7 0.0047 P8 GC+SHH+1d culture AATGAATAAA (2) 3.5 0.0035 P8 GC+SHH+1d culture CATAAAATAC (3) 3.5 0.0035 P8 GC+SHH+1d culture TGATGCTACC 3.5 0.0035 P8 GC+SHH+1d culture TATGAGACCT (2) 1.2 0.0012 P8 GC+SHH+1d culture TTAAGTCACC (2) 1.2 0.0012 3T3 fibroblasts ATTCTGGCAG 7 0.007 3T3 fibroblasts AGGCTGTGTT 3.5 0.0035 3T3 fibroblasts TAACCTCAAA 3.5 0.0035 3T3 fibroblasts TGATGCTACC 3.5 0.0035 3T3 fibroblasts TTAAGTCACC (2) 3.5 0.0035 E15 cortex ATTCTGGCAG 4.9 0.0049 P1 cortex TTTTGTGTTC 9.1 0.0091 P1 cortex TTAAGTCACC (2) 4.5 0.0045 Hypothalamus AATGAATAAA (2) 9.1 0.0091 Hypothalamus TCAATAAAGG 7.2 0.0072 Hypothalamus TTAAGTCACC (2) 5.4 0.0054 Hypothalamus TCTTTAGAGT 3.6 0.0036 Hypothalamus AGAGACAGGG (3) 1.8 0.0018 Hypothalamus ATTCTGGCAG 1.8 0.0018 Hypothalamus TGATGCTACC 1.8 0.0018 Hypothalamus TTTTGTGTTC 1.8 0.0018 E12.5 retina TGATGCTACC 7.5 0.0075 E12.5 retina AATGAATAAA (2) 5.6 0.0056 E12.5 retina CATAAAATAC (3) 3.8 0.0038 E12.5 retina TCAATAAAGG 1.9 0.0019 E12.5 retina TTTTGTGTTC 1.9 0.0019 E14.5 retina AATGAATAAA (2) 12.8 0.0128 E14.5 retina TCAATAAAGG 12.8 0.0128 E14.5 retina TATGAGACCT (2) 3.6 0.0036 E14.5 retina ATCAGTGTCT (2) 1.8 0.0018 E14.5 retina TTAAGTCACC (2) 1.8 0.0018 E14.5 retina TTTTGTGTTC 1.8 0.0018 E16.5 retina TCAATAAAGG 10.9 0.0109 E16.5 retina AATGAATAAA (2) 5.4 0.0054 E16.5 retina AGGCTGTGTT 3.6 0.0036 E16.5 retina ATTCTGGCAG 1.8 0.0018 E16.5 retina CATAAAATAC (3) 1.8 0.0018 E16.5 retina CTCATCTGAG (4) 1.8 0.0018 E16.5 retina TGATGCTACC 1.8 0.0018 E16.5 retina TGATGTTCAC 1.8 0.0018 E18.5 retina AATGAATAAA (2) 9.1 0.0091 E18.5 retina ATTCTGGCAG 1.8 0.0018 E18.5 retina CCTTCTGAAG 1.8 0.0018 E18.5 retina TCAATAAAGG 1.8 0.0018 E18.5 retina TGATGCTACC 1.8 0.0018 E18.5 retina TTAAGTCACC (2) 1.8 0.0018 P0.5 retina TCAATAAAGG 7.9 0.0079 P0.5 retina TGATGCTACC 3.9 0.0039 P0.5 retina ATTCTGGCAG 2 0.002 P0.5 retina TATGAGACCT (2) 2 0.002 P0.5 retina TTTTGTGTTC 2 0.002 P2.5 retina TCAATAAAGG 14.1 0.0141 P2.5 retina AATGAATAAA (2) 5.3 0.0053 P2.5 retina TGATGCTACC 5.3 0.0053 P2.5 retina ATTCTGGCAG 1.8 0.0018 P2.5 retina TGATGTTCAC 1.8 0.0018 P2.5 retina TTAAGTCACC (2) 1.8 0.0018 P2.5 retina TTTTGTGTTC 1.8 0.0018 P4.5 retina AATGAATAAA (2) 4 0.004 P4.5 retina TCAATAAAGG 4 0.004 P4.5 retina CTCATCTGAG (4) 2 0.002 P4.5 retina TGATGCTACC 2 0.002 P4.5 retina TTAAGTCACC (2) 2 0.002 P4.5 retina TTTTGTGTTC 2 0.002 P6.5 retina TCAATAAAGG 13.3 0.0133 P6.5 retina AATGAATAAA (2) 8.3 0.0083 P6.5 retina TGATGCTACC 8.3 0.0083 P6.5 retina TAACCTCAAA 1.7 0.0017 P6.5 retina TATGAGACCT (2) 1.7 0.0017 P6.5 retina TTTTGTGTTC 1.7 0.0017 P10.5 crx- retina ATTCTGGCAG 5.6 0.0056 P10.5 crx- retina TCAATAAAGG 3.7 0.0037 P10.5 crx- retina AGAGACAGGG (3) 1.9 0.0019 P10.5 crx- retina TATGAGACCT (2) 1.9 0.0019 P10.5 crx- retina TCTTTAGAGT 1.9 0.0019 P10.5 crx+ retina TCAATAAAGG 5.8 0.0058 P10.5 crx+ retina AATGAATAAA (2) 3.8 0.0038 P10.5 crx+ retina TGATGCTACC 3.8 0.0038 P10.5 crx+ retina ATCAGTGTCT (2) 1.9 0.0019 P10.5 crx+ retina CCTTCTGAAG 1.9 0.0019 P10.5 crx+ retina TTTTGTGTTC 1.9 0.0019 Adult retinal TTTTGTGTTC 7.4 0.0074 Adult retinal TCAATAAAGG 3.7 0.0037 Adult retinal AGAGACAGGG (3) 1.9 0.0019 Adult retinal ATCAGTGTCT (2) 1.9 0.0019 Adult retinal ATTCTGGCAG 1.9 0.0019 ONL TGATGCTACC 5.7 0.0057 ONL AATGAATAAA (2) 1.9 0.0019 ONL ATCAGTGTCT (2) 1.9 0.0019 ONL CATAAAATAC (3) 1.9 0.0019 ONL CTCATCTGAG (4) 1.9 0.0019