Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.5001	4833432E10Rik	RIKEN cDNA 4833432E10 gene	12		78782
Mm.5001	Dnmt3a	DNA methyltransferase 3A	12		13435
Gene Ontology	DNA (cytosine-5-)-methyltransferase activity | DNA binding | DNA methylation | imprinting | methyltransferase activity | nuclear heterochromatin | nucleus | protein binding | regulation of transcription, DNA-dependent | spermatogenesis | transferase activity
Human Homolog	DNMT3A[DNA (cytosine-5-)-methyltransferase 3 alpha]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 79 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACCAGGAATG (2) 1.6 0.0016 P8 Cb GC CAAAACAGAA (6) 1.6 0.0016 P8 Cb GC GCATTTTCTT (6) 1.6 0.0016 P8 Cb GC GGGCTTCCAT (3) 1.6 0.0016 P8 Cb GC GGGGCAAACT (5) 1.6 0.0016 P8 Cb GC TCGGGTGGGT (6) 1.6 0.0016 P8 Cb GC TTATTAAAAA (12) 1.6 0.0016 Cb medulloblastoma GCATTTTCTT (6) 4.6 0.0046 Cb medulloblastoma TCGGGTGGGT (6) 2.3 0.0023 P8 GC+1d culture TTATTAAAAA (12) 4.6 0.0046 P8 GC+1d culture GCATTTTCTT (6) 3.4 0.0034 P8 GC+1d culture TCGGGTGGGT (6) 2.3 0.0023 P8 GC+SHH+1d culture GCATTTTCTT (6) 4.7 0.0047 P8 GC+SHH+1d culture TTATTAAAAA (12) 2.3 0.0023 P8 GC+SHH+1d culture AAGAAAAATA (4) 1.2 0.0012 P8 GC+SHH+1d culture CAGCCATTTG (2) 1.2 0.0012 P8 GC+SHH+1d culture TATTCATACT (2) 1.2 0.0012 P8 GC+SHH+1d culture TCGGGTGGGT (6) 1.2 0.0012 3T3 fibroblasts CAGCCATTTG (2) 3.5 0.0035 E15 cortex CCAGAAATTA (2) 9.9 0.0099 E15 cortex GGGGCAAACT (5) 4.9 0.0049 E15 cortex TCGGGTGGGT (6) 4.9 0.0049 P1 cortex CAGCCATTTG (2) 4.5 0.0045 P1 cortex CCAGAAATTA (2) 4.5 0.0045 Hypothalamus CAGCCATTTG (2) 3.6 0.0036 Hypothalamus AACATACAAA (10) 1.8 0.0018 Hypothalamus GCATTTTCTT (6) 1.8 0.0018 E12.5 retina GGGGCAAACT (5) 3.8 0.0038 E12.5 retina AAGAAAAATA (4) 1.9 0.0019 E12.5 retina CAAAACAGAA (6) 1.9 0.0019 E12.5 retina TCGGGTGGGT (6) 1.9 0.0019 E14.5 retina TCGGGTGGGT (6) 3.6 0.0036 E14.5 retina TTATTAAAAA (12) 3.6 0.0036 E16.5 retina ACCAGGAATG (2) 5.4 0.0054 E16.5 retina GGGCTTCCAT (3) 5.4 0.0054 E16.5 retina TCGGGTGGGT (6) 5.4 0.0054 E16.5 retina GCATTTTCTT (6) 3.6 0.0036 E16.5 retina AAGAAAAATA (4) 1.8 0.0018 E16.5 retina CAGCCATTTG (2) 1.8 0.0018 E16.5 retina TTATTAAAAA (12) 1.8 0.0018 E18.5 retina ACCAGGAATG (2) 1.8 0.0018 E18.5 retina CAAAACAGAA (6) 1.8 0.0018 E18.5 retina GGCACTTTTT (6) 1.8 0.0018 E18.5 retina TCGGGTGGGT (6) 1.8 0.0018 P0.5 retina GGGGCAAACT (5) 3.9 0.0039 P0.5 retina AACATACAAA (10) 2 0.002 P0.5 retina TCGGGTGGGT (6) 2 0.002 P2.5 retina GGGCTTCCAT (3) 8.8 0.0088 P2.5 retina GCATTTTCTT (6) 5.3 0.0053 P2.5 retina CAAAACAGAA (6) 1.8 0.0018 P2.5 retina CAGCCATTTG (2) 1.8 0.0018 P2.5 retina GGCACTTTTT (6) 1.8 0.0018 P4.5 retina GCATTTTCTT (6) 5.9 0.0059 P4.5 retina AACATACAAA (10) 2 0.002 P4.5 retina TTATTAAAAA (12) 2 0.002 P6.5 retina GCATTTTCTT (6) 10 0.01 P6.5 retina CAGCCATTTG (2) 8.3 0.0083 P6.5 retina TTATTAAAAA (12) 5 0.005 P6.5 retina AAGAAAAATA (4) 3.3 0.0033 P6.5 retina ACCAGGAATG (2) 3.3 0.0033 P6.5 retina GGCACTTTTT (6) 3.3 0.0033 P6.5 retina TCGGGTGGGT (6) 1.7 0.0017 P10.5 crx- retina GCATTTTCTT (6) 14.9 0.0149 P10.5 crx- retina TTATTAAAAA (12) 3.7 0.0037 P10.5 crx- retina GGCACTTTTT (6) 1.9 0.0019 P10.5 crx- retina GGGGCAAACT (5) 1.9 0.0019 P10.5 crx+ retina CAGCCATTTG (2) 11.5 0.0115 P10.5 crx+ retina GCATTTTCTT (6) 9.6 0.0096 P10.5 crx+ retina GGGGCAAACT (5) 1.9 0.0019 P10.5 crx+ retina TCGGGTGGGT (6) 1.9 0.0019 Adult retinal AAGAAAAATA (4) 1.9 0.0019 Adult retinal GCATTTTCTT (6) 1.9 0.0019 Adult retinal TATTCATACT (2) 1.9 0.0019 Adult retinal TCGGGTGGGT (6) 1.9 0.0019 ONL CAGCCATTTG (2) 5.7 0.0057 ONL AACATACAAA (10) 3.8 0.0038 ONL TATTCATACT (2) 3.8 0.0038 ONL TCGGGTGGGT (6) 3.8 0.0038 ONL TTATTAAAAA (12) 1.9 0.0019