Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.5260	Slc6a1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	3	6 E3 (3 50.4 cM)	232333
Gene Ontology	gamma-aminobutyric acid:sodium symporter activity | integral to membrane | integral to plasma membrane | membrane | neurotransmitter transport | neurotransmitter:sodium symporter activity | symporter activity | transport
Human Homolog	SLC6A1[solute carrier family 6 (neurotransmitter transporter, GABA), member 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 7 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 75 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TACGTTTCTA 11.4 0.0114 P8 Cb GC CAGAGAGGGG (2) 1.6 0.0016 P8 Cb GC TGGCTGGGGG (5) 1.6 0.0016 Cb medulloblastoma TACGTTTCTA 48.6 0.0486 P8 GC+1d culture CTGCTGATGC (4) 2.3 0.0023 P8 GC+1d culture TGGCTGGGGG (5) 2.3 0.0023 P8 GC+1d culture TACGTTTCTA 1.1 0.0011 P8 GC+SHH+1d culture TGGCTGGGGG (5) 4.7 0.0047 P8 GC+SHH+1d culture TACGTTTCTA 3.5 0.0035 P8 GC+SHH+1d culture AGGGACAGGT (3) 2.3 0.0023 P8 GC+SHH+1d culture TTTGTAAGCA (2) 2.3 0.0023 3T3 fibroblasts AGGGACAGGT (3) 3.5 0.0035 3T3 fibroblasts CTGCTGATGC (4) 3.5 0.0035 E15 cortex CTGCTGATGC (4) 4.9 0.0049 E15 cortex TACGTTTCTA 4.9 0.0049 P1 cortex AGGGACAGGT (3) 18.2 0.0182 P1 cortex TACGTTTCTA 4.5 0.0045 Hypothalamus TACGTTTCTA 36.2 0.0362 Hypothalamus CAGAGAGGGG (2) 5.4 0.0054 Hypothalamus CTGCTGATGC (4) 3.6 0.0036 Hypothalamus AGGGACAGGT (3) 1.8 0.0018 E14.5 retina CTGCTGATGC (4) 1.8 0.0018 E14.5 retina TGGCTGGGGG (5) 1.8 0.0018 E16.5 retina TACGTTTCTA 12.7 0.0127 E16.5 retina AGGGACAGGT (3) 5.4 0.0054 E16.5 retina TATAAATATT (8) 1.8 0.0018 E16.5 retina TCCTTGCAAA (2) 1.8 0.0018 E16.5 retina TGGCTGGGGG (5) 1.8 0.0018 E18.5 retina TACGTTTCTA 21.8 0.0218 E18.5 retina AAGATGTGTT (4) 3.6 0.0036 E18.5 retina CTGCTGATGC (4) 3.6 0.0036 E18.5 retina CAGAGAGGGG (2) 1.8 0.0018 E18.5 retina TCCACTTGGA (3) 1.8 0.0018 E18.5 retina TCCTTGCAAA (2) 1.8 0.0018 P0.5 retina TACGTTTCTA 9.8 0.0098 P0.5 retina CTGCTGATGC (4) 3.9 0.0039 P0.5 retina TCCACTTGGA (3) 2 0.002 P0.5 retina TCCTTGCAAA (2) 2 0.002 P2.5 retina TACGTTTCTA 29.9 0.0299 P2.5 retina TCCTTGCAAA (2) 5.3 0.0053 P2.5 retina AGGGACAGGT (3) 3.5 0.0035 P2.5 retina TCCACTTGGA (3) 3.5 0.0035 P2.5 retina AAGATGTGTT (4) 1.8 0.0018 P4.5 retina TACGTTTCTA 55.5 0.0555 P4.5 retina TCCTTGCAAA (2) 17.8 0.0178 P4.5 retina AGGGACAGGT (3) 4 0.004 P4.5 retina CTGCTGATGC (4) 4 0.004 P4.5 retina CAGAGAGGGG (2) 2 0.002 P4.5 retina TATAAATATT (8) 2 0.002 P4.5 retina TTTGTAAGCA (2) 2 0.002 P6.5 retina TCCTTGCAAA (2) 85 0.085 P6.5 retina TACGTTTCTA 38.3 0.0383 P6.5 retina AGGGACAGGT (3) 6.7 0.0067 P6.5 retina CTGCTGATGC (4) 3.3 0.0033 P10.5 crx- retina TCCTTGCAAA (2) 31.6 0.0316 P10.5 crx- retina TACGTTTCTA 26 0.026 P10.5 crx- retina AGGGACAGGT (3) 9.3 0.0093 P10.5 crx- retina CTGCTGATGC (4) 1.9 0.0019 P10.5 crx- retina TATAAATATT (8) 1.9 0.0019 P10.5 crx- retina TTTGTAAGCA (2) 1.9 0.0019 P10.5 crx+ retina TCCTTGCAAA (2) 248 0.248 P10.5 crx+ retina TACGTTTCTA 32.7 0.0327 P10.5 crx+ retina AGGGACAGGT (3) 5.8 0.0058 P10.5 crx+ retina TTTGTAAGCA (2) 3.8 0.0038 P10.5 crx+ retina CTGCTGATGC (4) 1.9 0.0019 P10.5 crx+ retina TGGCTGGGGG (5) 1.9 0.0019 Adult retinal TCCTTGCAAA (2) 311.1 0.3111 Adult retinal TACGTTTCTA 13 0.013 Adult retinal AGGGACAGGT (3) 3.7 0.0037 Adult retinal CTGCTGATGC (4) 1.9 0.0019 ONL TCCTTGCAAA (2) 375.4 0.3754 ONL TACGTTTCTA 11.5 0.0115 ONL AAGATGTGTT (4) 1.9 0.0019 ONL AGGGACAGGT (3) 1.9 0.0019 ONL TCCACTTGGA (3) 1.9 0.0019