Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.57734	C430041B13Rik	RIKEN cDNA C430041B13 gene	10		320976
Mm.57734	A130099P19Rik	RIKEN cDNA A130099P19 gene	10		319978
Mm.57734	Lims1	LIM and senescent cell antigen-like domains 1	10	10 30.0 cM	110829
Gene Ontology	cell-matrix adhesion | focal adhesion | protein binding
Human Homolog	LIMS1[LIM and senescent cell antigen-like domains 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 142 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC TGTGTGTGTG (115) 27.7 0.0277 P8 Cb GC AACTTTTAAA (7) 11.4 0.0114 P8 Cb GC TTCAAAGCCT (3) 4.9 0.0049 P8 Cb GC AGACAAAAAA (18) 3.3 0.0033 P8 Cb GC AAATGCACTA (5) 1.6 0.0016 P8 Cb GC AAGCCAGTCT (4) 1.6 0.0016 P8 Cb GC GGAGGGAAGG (9) 1.6 0.0016 P8 Cb GC TGCTATGAAA (8) 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma TGTGTGTGTG (115) 30.1 0.0301 Cb medulloblastoma AACTTTTAAA (7) 23.1 0.0231 Cb medulloblastoma AGACAAAAAA (18) 13.9 0.0139 Cb medulloblastoma CACACATTCA (8) 4.6 0.0046 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture TGTGTGTGTG (115) 27.4 0.0274 P8 GC+1d culture AACTTTTAAA (7) 14.8 0.0148 P8 GC+1d culture AGACAAAAAA (18) 6.8 0.0068 P8 GC+1d culture AACATAAAAT (4) 2.3 0.0023 P8 GC+1d culture TGCTATGAAA (8) 2.3 0.0023 P8 GC+1d culture TTCAAAGCCT (3) 2.3 0.0023 P8 GC+SHH+1d culture TGTGTGTGTG (115) 28.1 0.0281 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture AACTTTTAAA (7) 17.6 0.0176 P8 GC+SHH+1d culture AGACAAAAAA (18) 7 0.007 P8 GC+SHH+1d culture TTCAAAGCCT (3) 3.5 0.0035 P8 GC+SHH+1d culture AAATGCACTA (5) 1.2 0.0012 P8 GC+SHH+1d culture AACATAAAAT (4) 1.2 0.0012 P8 GC+SHH+1d culture AATTTTGTGT (5) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts TGTGTGTGTG (115) 28 0.028 3T3 fibroblasts AAGCCAGTCT (4) 10.5 0.0105 3T3 fibroblasts AATTTTGTGT (5) 3.5 0.0035 3T3 fibroblasts TTCAAAGCCT (3) 3.5 0.0035 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex AAGCCAGTCT (4) 9.9 0.0099 E15 cortex AAATGCACTA (5) 4.9 0.0049 E15 cortex AACTTTTAAA (7) 4.9 0.0049 E15 cortex TGCTATGAAA (8) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex AGACAAAAAA (18) 18.2 0.0182 P1 cortex TGTGTGTGTG (115) 18.2 0.0182 P1 cortex AACTTTTAAA (7) 9.1 0.0091 P1 cortex TTCAAAGCCT (3) 4.5 0.0045 Hypothalamus TGTGTGTGTG (115) 25.4 0.0254 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus AACTTTTAAA (7) 16.3 0.0163 Hypothalamus AGACAAAAAA (18) 10.9 0.0109 Hypothalamus TTAGCAGCAG (3) 3.6 0.0036 Hypothalamus TGCTATGAAA (8) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina TGTGTGTGTG (115) 43.2 0.0432 E12.5 retina AACTTTTAAA (7) 20.7 0.0207 E12.5 retina AGACAAAAAA (18) 9.4 0.0094 E12.5 retina AAGCCAGTCT (4) 1.9 0.0019 E12.5 retina AATTTTGTGT (5) 1.9 0.0019 E12.5 retina TTAGCAGCAG (3) 1.9 0.0019 E12.5 retina TTCAAAGCCT (3) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina TGTGTGTGTG (115) 54.7 0.0547 E14.5 retina AACTTTTAAA (7) 27.3 0.0273 E14.5 retina AGACAAAAAA (18) 5.5 0.0055 E14.5 retina TTCAAAGCCT (3) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina TGTGTGTGTG (115) 39.8 0.0398 E16.5 retina AACTTTTAAA (7) 14.5 0.0145 E16.5 retina AAATGCACTA (5) 1.8 0.0018 E16.5 retina AACATAAAAT (4) 1.8 0.0018 E16.5 retina AGACAAAAAA (18) 1.8 0.0018 E18.5 retina TGTGTGTGTG (115) 47.3 0.0473 E18.5 retina AACTTTTAAA (7) 27.3 0.0273 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina AGACAAAAAA (18) 9.1 0.0091 E18.5 retina TGCTATGAAA (8) 7.3 0.0073 E18.5 retina TTCAAAGCCT (3) 5.5 0.0055 E18.5 retina TTAGCAGCAG (3) 3.6 0.0036 E18.5 retina AACATAAAAT (4) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina TGTGTGTGTG (115) 21.6 0.0216 P0.5 retina AACTTTTAAA (7) 11.8 0.0118 P0.5 retina TTCAAAGCCT (3) 3.9 0.0039 P0.5 retina AGACAAAAAA (18) 2 0.002 P0.5 retina GGAGGGAAGG (9) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina TGTGTGTGTG (115) 35.2 0.0352 P2.5 retina AACTTTTAAA (7) 26.4 0.0264 P2.5 retina AGACAAAAAA (18) 7 0.007 P2.5 retina AAATGCACTA (5) 1.8 0.0018 P2.5 retina CACACATTCA (8) 1.8 0.0018 P2.5 retina GGAGGGAAGG (9) 1.8 0.0018 P2.5 retina TGCTATGAAA (8) 1.8 0.0018 P2.5 retina TTCAAAGCCT (3) 1.8 0.0018 P4.5 retina TGTGTGTGTG (115) 47.6 0.0476 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina AACTTTTAAA (7) 29.7 0.0297 P4.5 retina AGACAAAAAA (18) 7.9 0.0079 P4.5 retina TGCTATGAAA (8) 7.9 0.0079 P4.5 retina AATTTTGTGT (5) 2 0.002 P4.5 retina CACACATTCA (8) 2 0.002 P4.5 retina TTCAAAGCCT (3) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina TGTGTGTGTG (115) 41.7 0.0417 P6.5 retina AACTTTTAAA (7) 23.3 0.0233 P6.5 retina AGACAAAAAA (18) 15 0.015 P6.5 retina AACATAAAAT (4) 3.3 0.0033 P6.5 retina ATTTGTGTTT (4) 1.7 0.0017 P6.5 retina TGCTATGAAA (8) 1.7 0.0017 P6.5 retina TTAGCAGCAG (3) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina TGTGTGTGTG (115) 59.4 0.0594 P10.5 crx- retina AACTTTTAAA (7) 7.4 0.0074 P10.5 crx- retina AGACAAAAAA (18) 3.7 0.0037 P10.5 crx- retina ATTTGTGTTT (4) 3.7 0.0037 P10.5 crx- retina CACACATTCA (8) 3.7 0.0037 P10.5 crx- retina TTCAAAGCCT (3) 3.7 0.0037 P10.5 crx+ retina TGTGTGTGTG (115) 44.2 0.0442 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina AACTTTTAAA (7) 11.5 0.0115 P10.5 crx+ retina AGACAAAAAA (18) 11.5 0.0115 P10.5 crx+ retina TGCTATGAAA (8) 3.8 0.0038 P10.5 crx+ retina TTAGCAGCAG (3) 3.8 0.0038 P10.5 crx+ retina ATTTGTGTTT (4) 1.9 0.0019 P10.5 crx+ retina TTCAAAGCCT (3) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal TGTGTGTGTG (115) 53.7 0.0537 Adult retinal AGACAAAAAA (18) 38.9 0.0389 Adult retinal AACTTTTAAA (7) 3.7 0.0037 Adult retinal TGCTATGAAA (8) 3.7 0.0037 Adult retinal AAATGCACTA (5) 1.9 0.0019 Adult retinal AACATAAAAT (4) 1.9 0.0019 Adult retinal ATTTGTGTTT (4) 1.9 0.0019 Adult retinal GGAGGGAAGG (9) 1.9 0.0019 Adult retinal TTAGCAGCAG (3) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL AGACAAAAAA (18) 57.5 0.0575 ONL TGTGTGTGTG (115) 23 0.023 ONL AACTTTTAAA (7) 9.6 0.0096 ONL AACATAAAAT (4) 3.8 0.0038 ONL AAGCCAGTCT (4) 1.9 0.0019 ONL AATTTTGTGT (5) 1.9 0.0019 ONL GGAGGGAAGG (9) 1.9 0.0019 ONL TTCAAAGCCT (3) 1.9 0.0019