Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.57734	C430041B13Rik	RIKEN cDNA C430041B13 gene	10		320976
Mm.57734	A130099P19Rik	RIKEN cDNA A130099P19 gene	10		319978
Mm.57734	Lims1	LIM and senescent cell antigen-like domains 1	10	10 30.0 cM	110829
Gene Ontology	cell-matrix adhesion | focal adhesion | protein binding
Human Homolog	LIMS1[LIM and senescent cell antigen-like domains 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 62 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTCAAAGCCT (3) 4.9 0.0049 P8 Cb GC AGACAAAAAA (5) 3.3 0.0033 P8 Cb GC AAATGCACTA (5) 1.6 0.0016 P8 Cb GC AAGCCAGTCT (4) 1.6 0.0016 P8 Cb GC GGAGGGAAGG (4) 1.6 0.0016 Cb medulloblastoma AGACAAAAAA (5) 13.9 0.0139 Cb medulloblastoma CACACATTCA (5) 4.6 0.0046 P8 GC+1d culture AGACAAAAAA (5) 6.8 0.0068 P8 GC+1d culture TTCAAAGCCT (3) 2.3 0.0023 P8 GC+SHH+1d culture AGACAAAAAA (5) 7 0.007 P8 GC+SHH+1d culture TTCAAAGCCT (3) 3.5 0.0035 P8 GC+SHH+1d culture AAATGCACTA (5) 1.2 0.0012 3T3 fibroblasts AAGCCAGTCT (4) 10.5 0.0105 3T3 fibroblasts TTCAAAGCCT (3) 3.5 0.0035 E15 cortex AAGCCAGTCT (4) 9.9 0.0099 E15 cortex AAATGCACTA (5) 4.9 0.0049 P1 cortex AGACAAAAAA (5) 18.2 0.0182 P1 cortex TTCAAAGCCT (3) 4.5 0.0045 Hypothalamus AGACAAAAAA (5) 10.9 0.0109 Hypothalamus TTAGCAGCAG (3) 3.6 0.0036 E12.5 retina AGACAAAAAA (5) 9.4 0.0094 E12.5 retina AAGCCAGTCT (4) 1.9 0.0019 E12.5 retina TTAGCAGCAG (3) 1.9 0.0019 E12.5 retina TTCAAAGCCT (3) 1.9 0.0019 E14.5 retina AGACAAAAAA (5) 5.5 0.0055 E14.5 retina TTCAAAGCCT (3) 1.8 0.0018 E16.5 retina AAATGCACTA (5) 1.8 0.0018 E16.5 retina AGACAAAAAA (5) 1.8 0.0018 E18.5 retina AGACAAAAAA (5) 9.1 0.0091 E18.5 retina TTCAAAGCCT (3) 5.5 0.0055 E18.5 retina TTAGCAGCAG (3) 3.6 0.0036 P0.5 retina TTCAAAGCCT (3) 3.9 0.0039 P0.5 retina AGACAAAAAA (5) 2 0.002 P0.5 retina GGAGGGAAGG (4) 2 0.002 P2.5 retina AGACAAAAAA (5) 7 0.007 P2.5 retina AAATGCACTA (5) 1.8 0.0018 P2.5 retina CACACATTCA (5) 1.8 0.0018 P2.5 retina GGAGGGAAGG (4) 1.8 0.0018 P2.5 retina TTCAAAGCCT (3) 1.8 0.0018 P4.5 retina AGACAAAAAA (5) 7.9 0.0079 P4.5 retina CACACATTCA (5) 2 0.002 P4.5 retina TTCAAAGCCT (3) 2 0.002 P6.5 retina AGACAAAAAA (5) 15 0.015 P6.5 retina ATTTGTGTTT (3) 1.7 0.0017 P6.5 retina TTAGCAGCAG (3) 1.7 0.0017 P10.5 crx- retina AGACAAAAAA (5) 3.7 0.0037 P10.5 crx- retina ATTTGTGTTT (3) 3.7 0.0037 P10.5 crx- retina CACACATTCA (5) 3.7 0.0037 P10.5 crx- retina TTCAAAGCCT (3) 3.7 0.0037 P10.5 crx+ retina AGACAAAAAA (5) 11.5 0.0115 P10.5 crx+ retina TTAGCAGCAG (3) 3.8 0.0038 P10.5 crx+ retina ATTTGTGTTT (3) 1.9 0.0019 P10.5 crx+ retina TTCAAAGCCT (3) 1.9 0.0019 Adult retinal AGACAAAAAA (5) 38.9 0.0389 Adult retinal AAATGCACTA (5) 1.9 0.0019 Adult retinal ATTTGTGTTT (3) 1.9 0.0019 Adult retinal GGAGGGAAGG (4) 1.9 0.0019 Adult retinal TTAGCAGCAG (3) 1.9 0.0019 ONL AGACAAAAAA (5) 57.5 0.0575 ONL AAGCCAGTCT (4) 1.9 0.0019 ONL GGAGGGAAGG (4) 1.9 0.0019 ONL TTCAAAGCCT (3) 1.9 0.0019