Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.6343	Npm1	nucleophosmin 1	11		18148
Gene Ontology	nucleic acid binding | nucleolus | nucleus | protein binding | RNA binding
Human Homolog	NPM1[nucleophosmin (nucleolar phosphoprotein B23, numatrin)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 116 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGAAATAAAC (2) 53.8 0.0538 P8 Cb GC TTTTAACCTT (5) 14.7 0.0147 P8 Cb GC GTGGTGCACG (13) 6.5 0.0065 P8 Cb GC GGAAAATACA (4) 1.6 0.0016 P8 Cb GC TCTGGAAAGC (3) 1.6 0.0016 P8 Cb GC TGAAATAAAA (9) 1.6 0.0016 Cb medulloblastoma TGAAATAAAC (2) 34.7 0.0347 Cb medulloblastoma TGAAATAAAA (9) 11.6 0.0116 Cb medulloblastoma GTGGTGCACG (13) 9.2 0.0092 Cb medulloblastoma CAAGGGCAAA (6) 2.3 0.0023 P8 GC+1d culture TGAAATAAAC (2) 29.7 0.0297 P8 GC+1d culture GTGGTGCACG (13) 4.6 0.0046 P8 GC+1d culture TTTTAACCTT (5) 4.6 0.0046 P8 GC+1d culture TCTGGAAAGC (3) 3.4 0.0034 P8 GC+1d culture TGAAATAAAA (9) 3.4 0.0034 P8 GC+1d culture CAAGGGCAAA (6) 2.3 0.0023 P8 GC+1d culture TAAATAAACT (2) 1.1 0.0011 P8 GC+SHH+1d culture TGAAATAAAC (2) 65.6 0.0656 P8 GC+SHH+1d culture TTTTAACCTT (5) 10.5 0.0105 P8 GC+SHH+1d culture CAAGGGCAAA (6) 5.9 0.0059 P8 GC+SHH+1d culture GTGGTGCACG (13) 2.3 0.0023 P8 GC+SHH+1d culture TAAATAAACT (2) 2.3 0.0023 P8 GC+SHH+1d culture TATATTTGTC (3) 2.3 0.0023 3T3 fibroblasts GTGGTGCACG (13) 17.5 0.0175 3T3 fibroblasts TCTGGAAAGC (3) 10.5 0.0105 3T3 fibroblasts TGAAATAAAC (2) 7 0.007 3T3 fibroblasts TTTTAACCTT (5) 3.5 0.0035 E15 cortex GTGGTGCACG (13) 34.6 0.0346 E15 cortex TCTGGAAAGC (3) 14.8 0.0148 E15 cortex TGAAATAAAC (2) 9.9 0.0099 E15 cortex CAAGGGCAAA (6) 4.9 0.0049 E15 cortex TGAAATAAAA (9) 4.9 0.0049 P1 cortex TGAAATAAAC (2) 22.7 0.0227 P1 cortex TGAAATAAAT (7) 18.2 0.0182 P1 cortex TGAAATAAAA (9) 13.6 0.0136 P1 cortex GTGGTGCACG (13) 4.5 0.0045 Hypothalamus TGAAATAAAC (2) 36.2 0.0362 Hypothalamus TGAAATAAAA (9) 12.7 0.0127 Hypothalamus GTGGTGCACG (13) 3.6 0.0036 Hypothalamus TATATTTGTC (3) 1.8 0.0018 Hypothalamus TGAAATAAAT (7) 1.8 0.0018 Hypothalamus TTTTAACCTT (5) 1.8 0.0018 E12.5 retina TGAAATAAAC (2) 101.4 0.1014 E12.5 retina TTTTAACCTT (5) 11.3 0.0113 E12.5 retina TGAAATAAAA (9) 5.6 0.0056 E12.5 retina GTGGTGCACG (13) 1.9 0.0019 E12.5 retina TATATTTGTC (3) 1.9 0.0019 E12.5 retina TCTGGAAAGC (3) 1.9 0.0019 E14.5 retina TGAAATAAAC (2) 60.1 0.0601 E14.5 retina TTTTAACCTT (5) 14.6 0.0146 E14.5 retina GTGGTGCACG (13) 9.1 0.0091 E14.5 retina TATATTTGTC (3) 5.5 0.0055 E14.5 retina TGAAATAAAA (9) 5.5 0.0055 E14.5 retina CAAGGGCAAA (6) 1.8 0.0018 E14.5 retina GGAAAATACA (4) 1.8 0.0018 E16.5 retina TGAAATAAAC (2) 45.3 0.0453 E16.5 retina TGAAATAAAA (9) 10.9 0.0109 E16.5 retina TTTTAACCTT (5) 10.9 0.0109 E16.5 retina TATATTTGTC (3) 9.1 0.0091 E16.5 retina CAAGGGCAAA (6) 3.6 0.0036 E16.5 retina TCTGGAAAGC (3) 3.6 0.0036 E16.5 retina GTGGTGCACG (13) 1.8 0.0018 E18.5 retina TGAAATAAAC (2) 118.2 0.1182 E18.5 retina TTTTAACCTT (5) 16.4 0.0164 E18.5 retina TGAAATAAAA (9) 9.1 0.0091 E18.5 retina GTGGTGCACG (13) 5.5 0.0055 E18.5 retina TATATTTGTC (3) 5.5 0.0055 E18.5 retina GGAAAATACA (4) 1.8 0.0018 P0.5 retina TGAAATAAAC (2) 25.5 0.0255 P0.5 retina CAAGGGCAAA (6) 7.9 0.0079 P0.5 retina TTTTAACCTT (5) 7.9 0.0079 P0.5 retina GTGGTGCACG (13) 2 0.002 P0.5 retina TCTGGAAAGC (3) 2 0.002 P2.5 retina TGAAATAAAC (2) 47.5 0.0475 P2.5 retina CAAGGGCAAA (6) 8.8 0.0088 P2.5 retina TATATTTGTC (3) 5.3 0.0053 P2.5 retina TTTTAACCTT (5) 5.3 0.0053 P2.5 retina GTGGTGCACG (13) 3.5 0.0035 P2.5 retina GGAAAATACA (4) 1.8 0.0018 P2.5 retina TGAAATAAAA (9) 1.8 0.0018 P2.5 retina TGAAATAAAT (7) 1.8 0.0018 P4.5 retina TGAAATAAAC (2) 55.5 0.0555 P4.5 retina TGAAATAAAA (9) 15.9 0.0159 P4.5 retina GTGGTGCACG (13) 5.9 0.0059 P4.5 retina CAAGGGCAAA (6) 2 0.002 P4.5 retina TATATTTGTC (3) 2 0.002 P4.5 retina TTTTAACCTT (5) 2 0.002 P6.5 retina TGAAATAAAC (2) 15 0.015 P6.5 retina GTGGTGCACG (13) 6.7 0.0067 P6.5 retina TTTTAACCTT (5) 6.7 0.0067 P6.5 retina CAAGGGCAAA (6) 5 0.005 P6.5 retina TGAAATAAAA (9) 5 0.005 P6.5 retina GGAAAATACA (4) 1.7 0.0017 P10.5 crx- retina GTGGTGCACG (13) 7.4 0.0074 P10.5 crx- retina TGAAATAAAC (2) 7.4 0.0074 P10.5 crx- retina CAAGGGCAAA (6) 5.6 0.0056 P10.5 crx- retina TGAAATAAAA (9) 3.7 0.0037 P10.5 crx- retina TATATTTGTC (3) 1.9 0.0019 P10.5 crx- retina TTTTAACCTT (5) 1.9 0.0019 P10.5 crx+ retina GTGGTGCACG (13) 13.5 0.0135 P10.5 crx+ retina TGAAATAAAC (2) 7.7 0.0077 P10.5 crx+ retina GAAGCAAGCA 3.8 0.0038 P10.5 crx+ retina TGAAATAAAA (9) 3.8 0.0038 P10.5 crx+ retina GGAAAATACA (4) 1.9 0.0019 P10.5 crx+ retina TTTTAACCTT (5) 1.9 0.0019 Adult retinal GAAGCAAGCA 11.1 0.0111 Adult retinal GTGGTGCACG (13) 5.6 0.0056 Adult retinal TGAAATAAAC (2) 5.6 0.0056 Adult retinal TCTGGAAAGC (3) 1.9 0.0019 Adult retinal TGAAATAAAA (9) 1.9 0.0019 ONL TGAAATAAAC (2) 13.4 0.0134 ONL GAAGCAAGCA 9.6 0.0096 ONL GTGGTGCACG (13) 3.8 0.0038 ONL TGAAATAAAA (9) 3.8 0.0038 ONL CAAGGGCAAA (6) 1.9 0.0019 ONL TGAAATAAAT (7) 1.9 0.0019