Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.648	Prnp	prion protein	2	2 75.0 cM	19122
Gene Ontology	copper ion binding | copper ion homeostasis | endoplasmic reticulum | Golgi apparatus | lipid raft | lipid raft | nucleobase, nucleoside, nucleotide and nucleic acid metabolism | plasma membrane | response to oxidative stress
Human Homolog	PRNP[prion protein (p27-30) (Creutzfeld-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 105 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CATTTTGTTT (2) GCGGCGGATG TAACTTAGCA TATTTTGTTT 39.1 0.0391 Cb medulloblastoma CAAATTCAAA (2) CATTTTGTTT (2) GCGGCGGATG TATTTGGTGT TATTTTGTGT (2) TATTTTGTTT 62.4 0.0624 P8 GC+1d culture CATTTTGTTT (2) GCGGCGGATG TAACTTAGCA TATTCTGTTT (2) TATTTTGTGT (2) TATTTTGTTT 62.7 0.0627 P8 GC+SHH+1d culture CAAATTCAAA (2) CATTTTGTTT (2) GCGGCGGATG GGGGCCGCCC TATTCTGTTT (2) TATTTTGTGT (2) TATTTTGTTT 47 0.047 3T3 fibroblasts GCGGCGGATG TAACTTAGCA 2355.3 2.3553 E15 cortex CAAATTCAAA (2) GCGGCGGATG TATTTTGTTT 14.7 0.0147 P1 cortex GCGGCGGATG TATTTTGTTT 13.6 0.0136 Hypothalamus CAGATTCAAA GCGGCGGATG GGGGCCGCCC TACTTCACGT TATTTGGTGT TATTTTGTGT (2) TATTTTGTTT 65.1 0.0651 E12.5 retina CATTTTGTTT (2) GCGGCGGATG TATTTTGTTT 24.4 0.0244 E14.5 retina CAAATTCAAA (2) CATTTTGTTT (2) GCGGCGGATG TATTCTGTTT (2) TATTTTGTGT (2) TATTTTGTTT 31 0.031 E16.5 retina CAAATTCAAA (2) CATTTTGTTT (2) GCGGCGGATG TATTTTGTTT 16.2 0.0162 E18.5 retina CAAATTCAAA (2) CATTTTGTTT (2) GCGGCGGATG TATTTTGTTT 21.8 0.0218 P0.5 retina CATTTTGTTT (2) TATTCTGTTT (2) TATTTTGTTT TATTTTTGTT 17.7 0.0177 P2.5 retina CAAATTCAAA (2) CAGATTCAAA CATTTTGTTT (2) GCGGCGGATG GGGGCCGCCC TATTTTGTTT 42.4 0.0424 P4.5 retina CAGATTCAAA CATTTTGTTT (2) GCGGCGGATG TATTTTGTTT TATTTTTGTT 39.7 0.0397 P6.5 retina AAATACCTGA CAAATTCAAA (2) CAGATTCAAA CATTTTGTTT (2) GCGGCGGATG TATTCTGTTT (2) TATTTTGTTT 49.9 0.0499 P10.5 crx- retina AAATACCTGA CAGATTCAAA CATTTTGTTT (2) GCGGCGGATG TATTCTGTTT (2) TATTTTGTGT (2) TATTTTGTTT TATTTTTGTT 119.1 0.1191 P10.5 crx+ retina AAATACCTGA CATTTTGTTT (2) GCGGCGGATG TAACTTAGCA TACTTCACGT TATTCTGTTT (2) TATTTTGTTT 63.4 0.0634 Adult retinal AAATACCTGA CAAATTCAAA (2) CATTTTGTTT (2) GCGGCGGATG TATTTGGTGT TATTTTGTGT (2) TATTTTGTTT 42.6 0.0426 ONL AAATACCTGA CAGATTCAAA CATTTTGTTT (2) GCGGCGGATG TATTCTGTTT (2) TATTTTGTTT TATTTTTGTT 53.5 0.0535