Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.686	Actc1	actin, alpha, cardiac	2	2 64.0 cM	11464
Gene Ontology	actin cytoskeleton | actin filament | cytoskeleton | cytoskeleton organization and biogenesis | motor activity | muscle contraction | muscle development | regulation of heart rate | structural constituent of cytoskeleton | structural constituent of muscle | structural molecule activity
Human Homolog	ACTC[actin, alpha, cardiac muscle]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 105 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCTAATGTA (6) 230 0.23 P8 Cb GC CTAATAAAGC (6) 143.6 0.1436 P8 Cb GC AAGATCAAGA (18) 55.5 0.0555 P8 Cb GC GAGAAGATCT (13) 19.6 0.0196 P8 Cb GC GACAAGATCT (5) 3.3 0.0033 P8 Cb GC TATTTTGGCA (3) 3.3 0.0033 P8 Cb GC TTTGAGACCT (4) 3.3 0.0033 Cb medulloblastoma CTAATAAAGC (6) 78.6 0.0786 Cb medulloblastoma GCCTAATGTA (6) 64.7 0.0647 Cb medulloblastoma AAGATCAAGA (18) 13.9 0.0139 Cb medulloblastoma CTGTAAATAG (4) 2.3 0.0023 Cb medulloblastoma GAGAAGATCT (13) 2.3 0.0023 Cb medulloblastoma TATTTTGGCA (3) 2.3 0.0023 P8 GC+1d culture GCCTAATGTA (6) 223.7 0.2237 P8 GC+1d culture CTAATAAAGC (6) 135.8 0.1358 P8 GC+1d culture AAGATCAAGA (18) 24 0.024 P8 GC+1d culture AAAAGATCCC (6) 4.6 0.0046 P8 GC+1d culture CTGTAAATAG (4) 4.6 0.0046 P8 GC+1d culture GACAAGATCT (5) 1.1 0.0011 P8 GC+SHH+1d culture GCCTAATGTA (6) 207.3 0.2073 P8 GC+SHH+1d culture CTAATAAAGC (6) 165.1 0.1651 P8 GC+SHH+1d culture AAGATCAAGA (18) 17.6 0.0176 P8 GC+SHH+1d culture GAGAAGATCT (13) 2.3 0.0023 P8 GC+SHH+1d culture CTGTAAATAG (4) 1.2 0.0012 P8 GC+SHH+1d culture TTTGGAAACT 1.2 0.0012 3T3 fibroblasts GCCTAATGTA (6) 73.6 0.0736 3T3 fibroblasts CTAATAAAGC (6) 63.1 0.0631 3T3 fibroblasts AAGATCAAGA (18) 56.1 0.0561 3T3 fibroblasts GAGAAGATCT (13) 7 0.007 E15 cortex AAGATCAAGA (18) 94 0.094 E15 cortex CTAATAAAGC (6) 24.7 0.0247 E15 cortex GCCTAATGTA (6) 9.9 0.0099 E15 cortex GAGAAGATCT (13) 4.9 0.0049 P1 cortex GCCTAATGTA (6) 72.7 0.0727 P1 cortex AAGATCAAGA (18) 63.6 0.0636 P1 cortex CTAATAAAGC (6) 63.6 0.0636 P1 cortex CTGTAAATAG (4) 4.5 0.0045 Hypothalamus GCCTAATGTA (6) 222.8 0.2228 Hypothalamus CTAATAAAGC (6) 121.4 0.1214 Hypothalamus AAGATCAAGA (18) 5.4 0.0054 Hypothalamus AAGATCAGGA (2) 1.8 0.0018 Hypothalamus CTGTAAATAG (4) 1.8 0.0018 Hypothalamus GAGAAGATCT (13) 1.8 0.0018 E12.5 retina GCCTAATGTA (6) 403.6 0.4036 E12.5 retina CTAATAAAGC (6) 244.1 0.2441 E12.5 retina AAGATCAAGA (18) 50.7 0.0507 E14.5 retina GCCTAATGTA (6) 300.6 0.3006 E14.5 retina CTAATAAAGC (6) 136.6 0.1366 E14.5 retina AAGATCAAGA (18) 7.3 0.0073 E14.5 retina GACAAGATCT (5) 3.6 0.0036 E16.5 retina GCCTAATGTA (6) 264.4 0.2644 E16.5 retina CTAATAAAGC (6) 186.6 0.1866 E16.5 retina AAGATCAAGA (18) 7.2 0.0072 E16.5 retina CTGTAAATAG (4) 1.8 0.0018 E16.5 retina GACAAGATCT (5) 1.8 0.0018 E18.5 retina CTAATAAAGC (6) 296.5 0.2965 E18.5 retina GCCTAATGTA (6) 281.9 0.2819 E18.5 retina AAGATCAAGA (18) 7.3 0.0073 E18.5 retina CTGTAAATAG (4) 3.6 0.0036 E18.5 retina GACAAGATCT (5) 1.8 0.0018 E18.5 retina TATTTTGGCA (3) 1.8 0.0018 P0.5 retina GCCTAATGTA (6) 155 0.155 P0.5 retina CTAATAAAGC (6) 135.4 0.1354 P0.5 retina AAGATCAAGA (18) 27.5 0.0275 P0.5 retina TATTTTGGCA (3) 3.9 0.0039 P2.5 retina GCCTAATGTA (6) 248.1 0.2481 P2.5 retina CTAATAAAGC (6) 190.1 0.1901 P2.5 retina AAGATCAAGA (18) 5.3 0.0053 P2.5 retina CTGTAAATAG (4) 3.5 0.0035 P2.5 retina AAAGATCCCT (8) 1.8 0.0018 P2.5 retina AAGATCAGGA (2) 1.8 0.0018 P2.5 retina TTTGGAAACT 1.8 0.0018 P4.5 retina GCCTAATGTA (6) 255.6 0.2556 P4.5 retina CTAATAAAGC (6) 160.5 0.1605 P4.5 retina AAGATCAAGA (18) 11.9 0.0119 P4.5 retina CTGTAAATAG (4) 2 0.002 P6.5 retina GCCTAATGTA (6) 176.7 0.1767 P6.5 retina CTAATAAAGC (6) 123.4 0.1234 P6.5 retina AAGATCAAGA (18) 6.7 0.0067 P6.5 retina AAGATCAGGA (2) 1.7 0.0017 P6.5 retina GAGAAGATCT (13) 1.7 0.0017 P6.5 retina TATTTTGGCA (3) 1.7 0.0017 P10.5 crx- retina GCCTAATGTA (6) 109.6 0.1096 P10.5 crx- retina CTAATAAAGC (6) 74.3 0.0743 P10.5 crx- retina CTGTAAATAG (4) 3.7 0.0037 P10.5 crx- retina AAAGATCCCT (8) 1.9 0.0019 P10.5 crx- retina AAGATCAAGA (18) 1.9 0.0019 P10.5 crx- retina TATTTTGGCA (3) 1.9 0.0019 P10.5 crx+ retina GCCTAATGTA (6) 146.1 0.1461 P10.5 crx+ retina CTAATAAAGC (6) 94.2 0.0942 P10.5 crx+ retina AAGATCAAGA (18) 11.5 0.0115 P10.5 crx+ retina AAAAGATCCC (6) 1.9 0.0019 P10.5 crx+ retina AAGATCAGGA (2) 1.9 0.0019 P10.5 crx+ retina CTGTAAATAG (4) 1.9 0.0019 P10.5 crx+ retina GAGAAGATCT (13) 1.9 0.0019 Adult retinal GCCTAATGTA (6) 85.2 0.0852 Adult retinal CTAATAAAGC (6) 40.7 0.0407 Adult retinal AAGATCAAGA (18) 3.7 0.0037 Adult retinal CTGTAAATAG (4) 3.7 0.0037 Adult retinal AAAGATCCCT (8) 1.9 0.0019 Adult retinal TTTGAGACCT (4) 1.9 0.0019 ONL GCCTAATGTA (6) 63.2 0.0632 ONL CTAATAAAGC (6) 34.5 0.0345 ONL AAGATCAAGA (18) 5.7 0.0057 ONL TTTGGAAACT 1.9 0.0019