Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.726	Bsg	basigin	10	10 42.4 cM	12215
Gene Ontology	extracellular space | integral to membrane | mannose binding | membrane | sugar binding
Human Homolog	BSG[basigin (OK blood group)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 156 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTCTGACTTA 52.2 0.0522 P8 Cb GC AATGACAAGG (2) 14.7 0.0147 P8 Cb GC CACTGGCCTT (4) 6.5 0.0065 P8 Cb GC CTTTGACTTA 1.6 0.0016 P8 Cb GC GACTCACTGA (6) 1.6 0.0016 P8 Cb GC GCAGCCCTCC (2) 1.6 0.0016 P8 Cb GC GCAGCCCTCT (9) 1.6 0.0016 Cb medulloblastoma CTCTGACTTA 32.4 0.0324 Cb medulloblastoma AACCTCTGCC (3) 4.6 0.0046 Cb medulloblastoma CACTGGCCTT (4) 4.6 0.0046 Cb medulloblastoma GCAGCCCTCT (9) 4.6 0.0046 Cb medulloblastoma AATGACAAGG (2) 2.3 0.0023 Cb medulloblastoma AGCATTCCAG (3) 2.3 0.0023 Cb medulloblastoma GAGGCCTCTG (2) 2.3 0.0023 Cb medulloblastoma GAGGGAGGGA (4) 2.3 0.0023 P8 GC+1d culture CTCTGACTTA 52.5 0.0525 P8 GC+1d culture CACTGGCCTT (4) 8 0.008 P8 GC+1d culture GCAGCCCCTA (3) 2.3 0.0023 P8 GC+1d culture AATGACAAGG (2) 1.1 0.0011 P8 GC+1d culture GAGGCCTCTG (2) 1.1 0.0011 P8 GC+1d culture GCAGGCCTCT 1.1 0.0011 P8 GC+1d culture GGCAGGCCCC (3) 1.1 0.0011 P8 GC+SHH+1d culture CTCTGACTTA 50.3 0.0503 P8 GC+SHH+1d culture CACTGGCCTT (4) 7 0.007 P8 GC+SHH+1d culture AAACCCCCCA (2) 1.2 0.0012 P8 GC+SHH+1d culture AACCTCTGCC (3) 1.2 0.0012 P8 GC+SHH+1d culture AATGAACAAG 1.2 0.0012 P8 GC+SHH+1d culture AATGACAAGG (2) 1.2 0.0012 P8 GC+SHH+1d culture ATGACGCTAC (2) 1.2 0.0012 P8 GC+SHH+1d culture GAGGCCCTCT (3) 1.2 0.0012 P8 GC+SHH+1d culture GAGGCCTCTG (2) 1.2 0.0012 P8 GC+SHH+1d culture GAGGGAGGGA (4) 1.2 0.0012 P8 GC+SHH+1d culture GCAGCCCTCC (2) 1.2 0.0012 3T3 fibroblasts CTCTGACTTA 59.6 0.0596 3T3 fibroblasts CACTGGCCTT (4) 24.5 0.0245 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts AATGACAAGG (2) 7 0.007 3T3 fibroblasts GCAGCCCTCC (2) 3.5 0.0035 E15 cortex GCAGCCCCTA (3) 14.8 0.0148 E15 cortex CTCTGACTTA 9.9 0.0099 E15 cortex GAGGCCTCTG (2) 4.9 0.0049 E15 cortex GAGGGGGGGG (9) 4.9 0.0049 E15 cortex GCAGGCCTCT 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex CTCTGACTTA 63.6 0.0636 P1 cortex GCAGCCCCTA (3) 27.3 0.0273 P1 cortex CACTGGCCTT (4) 9.1 0.0091 P1 cortex GAGGCCTCTG (2) 9.1 0.0091 P1 cortex AGCATTCCAG (3) 4.5 0.0045 P1 cortex GACTCACTGA (6) 4.5 0.0045 Hypothalamus CTCTGACTTA 23.5 0.0235 Hypothalamus CACTGGCCTT (4) 5.4 0.0054 Hypothalamus AACCTCTGCC (3) 3.6 0.0036 Hypothalamus AATGACAAGG (2) 3.6 0.0036 Hypothalamus CAGCCAGTTC (3) 1.8 0.0018 Hypothalamus GCAGCCCCTA (3) 1.8 0.0018 E12.5 retina CTCTGACTTA 39.4 0.0394 E12.5 retina CACTGGCCTT (4) 7.5 0.0075 E12.5 retina GGCAGGCCCC (3) 5.6 0.0056 E12.5 retina AATGACAAGG (2) 3.8 0.0038 E12.5 retina AGCATTCCAG (3) 3.8 0.0038 E12.5 retina AACCTCTGCC (3) 1.9 0.0019 E14.5 retina CTCTGACTTA 10.9 0.0109 E14.5 retina AACCTCTGCC (3) 1.8 0.0018 E14.5 retina AATGACAAGG (2) 1.8 0.0018 E14.5 retina CAGACGTGAA 1.8 0.0018 E14.5 retina GACTCACTGA (6) 1.8 0.0018 E14.5 retina GAGGGGGGGG (9) 1.8 0.0018 E14.5 retina GCAGCCCCTA (3) 1.8 0.0018 E14.5 retina GCAGCCCTCT (9) 1.8 0.0018 E16.5 retina CTCTGACTTA 14.5 0.0145 E16.5 retina AATGACAAGG (2) 5.4 0.0054 E16.5 retina GAGGCCTCTG (2) 3.6 0.0036 E16.5 retina GCAGCCCCTA (3) 3.6 0.0036 E16.5 retina CACTGGCCTT (4) 1.8 0.0018 E16.5 retina CAGCCAGTTC (3) 1.8 0.0018 E16.5 retina GAGGGAGGGA (4) 1.8 0.0018 E16.5 retina GCAGCCCTCT (9) 1.8 0.0018 E16.5 retina GCAGGCCTCT 1.8 0.0018 E16.5 retina GCCAGCCCCT (5) 1.8 0.0018 E18.5 retina CTCTGACTTA 12.7 0.0127 E18.5 retina CACTGGCCTT (4) 5.5 0.0055 E18.5 retina AATGACAAGG (2) 3.6 0.0036 E18.5 retina GAGGGAGGGA (4) 3.6 0.0036 E18.5 retina CTTTGACTTA 1.8 0.0018 E18.5 retina GAGGCCCTCT (3) 1.8 0.0018 E18.5 retina GAGGCCTCTG (2) 1.8 0.0018 E18.5 retina GGCAGGCCCC (3) 1.8 0.0018 P0.5 retina CTCTGACTTA 15.7 0.0157 P0.5 retina GCAGCCCCTA (3) 5.9 0.0059 P0.5 retina CACTGGCCTT (4) 3.9 0.0039 P0.5 retina GGCAGGCCCC (3) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina AACCTCTGCC (3) 2 0.002 P0.5 retina GAGGCCTCTG (2) 2 0.002 P0.5 retina GCCAGCCCCT (5) 2 0.002 P2.5 retina CTCTGACTTA 37 0.037 P2.5 retina AATGACAAGG (2) 5.3 0.0053 P2.5 retina GAGGGAGGGA (4) 3.5 0.0035 P2.5 retina AAACCCCCCA (2) 1.8 0.0018 P2.5 retina CACTGGCCTT (4) 1.8 0.0018 P2.5 retina CAGACGTGAA 1.8 0.0018 P2.5 retina CTTTGACTTA 1.8 0.0018 P2.5 retina GCAGCCCCTA (3) 1.8 0.0018 P2.5 retina GCAGGCCTCT 1.8 0.0018 P2.5 retina GGCAGGCCCC (3) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina CTCTGACTTA 29.7 0.0297 P4.5 retina AATGACAAGG (2) 2 0.002 P4.5 retina AGCATTCCAG (3) 2 0.002 P4.5 retina GAGGCCCTCT (3) 2 0.002 P4.5 retina GCAGCCCCTA (3) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina CTCTGACTTA 33.3 0.0333 P6.5 retina CACTGGCCTT (4) 10 0.01 P6.5 retina AGCATTCCAG (3) 3.3 0.0033 P6.5 retina GCAGCCCCTA (3) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina GAGGCCTCTG (2) 1.7 0.0017 P6.5 retina GAGGGAGGGA (4) 1.7 0.0017 P10.5 crx- retina CTCTGACTTA 50.2 0.0502 P10.5 crx- retina AATGACAAGG (2) 14.9 0.0149 P10.5 crx- retina AAACCCCCCA (2) 3.7 0.0037 P10.5 crx- retina AACCTCTGCC (3) 1.9 0.0019 P10.5 crx- retina CACTGGCCTT (4) 1.9 0.0019 P10.5 crx- retina CAGCCAGTTC (3) 1.9 0.0019 P10.5 crx- retina GAGGCCTCTG (2) 1.9 0.0019 P10.5 crx- retina GAGGGGGGGG (9) 1.9 0.0019 P10.5 crx+ retina CTCTGACTTA 51.9 0.0519 P10.5 crx+ retina CACTGGCCTT (4) 17.3 0.0173 P10.5 crx+ retina AATGACAAGG (2) 5.8 0.0058 P10.5 crx+ retina AACCTCTGCC (3) 3.8 0.0038 P10.5 crx+ retina AGCATTCCAG (3) 1.9 0.0019 P10.5 crx+ retina ATGACGCTAC (2) 1.9 0.0019 P10.5 crx+ retina CAGCCAGTTC (3) 1.9 0.0019 P10.5 crx+ retina GCAGCCCTCT (9) 1.9 0.0019 P10.5 crx+ retina GGCAGGCCCC (3) 1.9 0.0019 Adult retinal CTCTGACTTA 51.8 0.0518 Adult retinal CACTGGCCTT (4) 11.1 0.0111 Adult retinal GCAGCCCTCT (9) 3.7 0.0037 Adult retinal AAACCCCCCA (2) 1.9 0.0019 Adult retinal AACCTCTGCC (3) 1.9 0.0019 Adult retinal AATGACAAGG (2) 1.9 0.0019 Adult retinal ATGACGCTAC (2) 1.9 0.0019 Adult retinal CAGACGTGAA 1.9 0.0019 Adult retinal GCAGCCCTCC (2) 1.9 0.0019 Adult retinal GCAGGCCTCT 1.9 0.0019 Adult retinal GCCAGCCCCT (5) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL CTCTGACTTA 24.9 0.0249 ONL CACTGGCCTT (4) 7.7 0.0077 ONL GTCATAGCTG (590) 5.7 0.0057 ONL AATGACAAGG (2) 3.8 0.0038 ONL AGCATTCCAG (3) 1.9 0.0019 ONL GAGGGAGGGA (4) 1.9 0.0019 ONL GCAGGCCTCT 1.9 0.0019