Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.7271	Nxf1	nuclear RNA export factor 1 homolog (S. cerevisiae)	19	19 5.0 cM	53319
Gene Ontology	intracellular | mRNA processing | mRNA-nucleus export | nuclear pore | nucleocytoplasmic transporter activity | nucleus | protein binding | protein transporter activity | protein-nucleus import | RNA binding | RNA-nucleus export | transport
Human Homolog	NXF1[nuclear RNA export factor 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 78 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC GTGCCAGGAA 9.8 0.0098 P8 Cb GC ATAACCGTGT (2) 4.9 0.0049 P8 Cb GC GCTCACAGAG (4) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma GCTCACAGAG (4) 4.6 0.0046 Cb medulloblastoma GTGCCAGGAA 4.6 0.0046 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GTGCCAGGAA 9.1 0.0091 P8 GC+1d culture GCTCACAGAG (4) 2.3 0.0023 P8 GC+1d culture ATAACCGTGT (2) 1.1 0.0011 P8 GC+1d culture GAATAATAGA 1.1 0.0011 P8 GC+1d culture TGTGAATGGC (3) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture GTGCCAGGAA 15.2 0.0152 P8 GC+SHH+1d culture GCTCACAGAG (4) 4.7 0.0047 P8 GC+SHH+1d culture AGGCTCAATC 1.2 0.0012 P8 GC+SHH+1d culture ATAACCGTGT (2) 1.2 0.0012 P8 GC+SHH+1d culture GAATAATAGA 1.2 0.0012 P8 GC+SHH+1d culture TGTAACAAGG (2) 1.2 0.0012 P8 GC+SHH+1d culture TGTGAATGGC (3) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GTGCCAGGAA 17.5 0.0175 3T3 fibroblasts GCTCACAGAG (4) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GTGCCAGGAA 9.9 0.0099 E15 cortex GCTCACAGAG (4) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex GTGCCAGGAA 13.6 0.0136 P1 cortex GCTCACAGAG (4) 4.5 0.0045 P1 cortex TGTAACAAGG (2) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GTGCCAGGAA 5.4 0.0054 Hypothalamus ATAACCGTGT (2) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina GTGCCAGGAA 28.2 0.0282 E12.5 retina GCTCACAGAG (4) 5.6 0.0056 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina GTGCCAGGAA 14.6 0.0146 E14.5 retina AGGCTCAATC 1.8 0.0018 E14.5 retina GCTCACAGAG (4) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GTGCCAGGAA 16.3 0.0163 E16.5 retina GAATAATAGA 1.8 0.0018 E16.5 retina GCTCACAGAG (4) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina GTGCCAGGAA 21.8 0.0218 E18.5 retina GCTCACAGAG (4) 1.8 0.0018 E18.5 retina TGTGAATGGC (3) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina GTGCCAGGAA 23.6 0.0236 P0.5 retina GCTCACAGAG (4) 7.9 0.0079 P0.5 retina AGGCTCAATC 2 0.002 P0.5 retina ATAACCGTGT (2) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina GTGCCAGGAA 33.4 0.0334 P2.5 retina GCTCACAGAG (4) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina GTGCCAGGAA 11.9 0.0119 P4.5 retina GAATAATAGA 2 0.002 P4.5 retina GCTCACAGAG (4) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina GTGCCAGGAA 11.7 0.0117 P6.5 retina GAATAATAGA 1.7 0.0017 P6.5 retina TGTAACAAGG (2) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina GTGCCAGGAA 26 0.026 P10.5 crx- retina GCTCACAGAG (4) 5.6 0.0056 P10.5 crx- retina ATAACCGTGT (2) 3.7 0.0037 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina GTGCCAGGAA 17.3 0.0173 P10.5 crx+ retina GCTCACAGAG (4) 3.8 0.0038 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GTGCCAGGAA 16.7 0.0167 Adult retinal GCTCACAGAG (4) 7.4 0.0074 Adult retinal TGTGAATGGC (3) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GTGCCAGGAA 13.4 0.0134