Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.738	Col4a1	procollagen, type IV, alpha 1	8	8 5.0 cM	12826
Gene Ontology	basement membrane | cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | phosphate transport
Human Homolog	COL4A1[collagen, type IV, alpha 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 79 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGTTAACCA (3) 75 0.075 P8 Cb GC GTGTCTGATA (4) 4.9 0.0049 P8 Cb GC GTGCTACTCC 3.3 0.0033 Cb medulloblastoma GTGTTAACCA (3) 6.9 0.0069 Cb medulloblastoma GGGGAAATGG (9) 2.3 0.0023 P8 GC+1d culture GTGTTAACCA (3) 33.1 0.0331 P8 GC+1d culture GGCACCATCT (3) 6.8 0.0068 P8 GC+1d culture GTGTCTGATA (4) 6.8 0.0068 P8 GC+1d culture GTGCTACTCC 5.7 0.0057 P8 GC+1d culture GATGTAGTGT 1.1 0.0011 P8 GC+1d culture GCTTTCCTGT 1.1 0.0011 P8 GC+SHH+1d culture GTGTTAACCA (3) 35.1 0.0351 P8 GC+SHH+1d culture GGCACCATCT (3) 5.9 0.0059 P8 GC+SHH+1d culture GTGCTACTCC 3.5 0.0035 P8 GC+SHH+1d culture GTGTCTGATA (4) 2.3 0.0023 P8 GC+SHH+1d culture GATGTAGTGT 1.2 0.0012 P8 GC+SHH+1d culture GTGAAGGCGG 1.2 0.0012 3T3 fibroblasts GTGTTAACCA (3) 112.2 0.1122 3T3 fibroblasts GTGCTACTCC 3.5 0.0035 3T3 fibroblasts GTGTCTGATA (4) 3.5 0.0035 E15 cortex GTGTTAACCA (3) 69.3 0.0693 E15 cortex GTGAAGGCGG 14.8 0.0148 E15 cortex GCTTCCTGTG (8) 4.9 0.0049 P1 cortex GTGTTAACCA (3) 63.6 0.0636 P1 cortex GTGTCTGATA (4) 22.7 0.0227 P1 cortex GGCACCATCT (3) 4.5 0.0045 P1 cortex GGGGAAATGG (9) 4.5 0.0045 Hypothalamus GTGTTAACCA (3) 9.1 0.0091 Hypothalamus GGCACCATCT (3) 1.8 0.0018 Hypothalamus GTGTCTGATA (4) 1.8 0.0018 E12.5 retina GTGTTAACCA (3) 46.9 0.0469 E12.5 retina GATGTAGTGT 1.9 0.0019 E12.5 retina GCAGGCATTT 1.9 0.0019 E12.5 retina GTGTCTGATA (4) 1.9 0.0019 E14.5 retina GTGTTAACCA (3) 10.9 0.0109 E14.5 retina GATGTAGTGT 1.8 0.0018 E14.5 retina GCAGGCATTT 1.8 0.0018 E14.5 retina GCTTCCTGTG (8) 1.8 0.0018 E14.5 retina GCTTTCCTGT 1.8 0.0018 E14.5 retina GTGCTACTCC 1.8 0.0018 E16.5 retina GTGTTAACCA (3) 5.4 0.0054 E16.5 retina GATGTAGTGT 1.8 0.0018 E16.5 retina GCTTCCTGTG (8) 1.8 0.0018 E16.5 retina GCTTTCCTGT 1.8 0.0018 E16.5 retina GTGTCTGATA (4) 1.8 0.0018 E18.5 retina GTGTTAACCA (3) 10.9 0.0109 E18.5 retina GCTTTCCTGT 1.8 0.0018 E18.5 retina GGCACCATCT (3) 1.8 0.0018 E18.5 retina GTGAAGGCGG 1.8 0.0018 E18.5 retina GTGTCTGATA (4) 1.8 0.0018 P0.5 retina GTGTTAACCA (3) 78.5 0.0785 P0.5 retina GTGTCTGATA (4) 7.9 0.0079 P0.5 retina GGCACCATCT (3) 2 0.002 P2.5 retina GTGTTAACCA (3) 22.9 0.0229 P2.5 retina GCTTCCTGTG (8) 3.5 0.0035 P2.5 retina GGGGAAATGG (9) 1.8 0.0018 P2.5 retina GTGATGGCGG 1.8 0.0018 P2.5 retina GTGCTACTCC 1.8 0.0018 P4.5 retina GTGTTAACCA (3) 9.9 0.0099 P4.5 retina GTGTCTGATA (4) 2 0.002 P6.5 retina GTGTTAACCA (3) 10 0.01 P6.5 retina GTGCTACTCC 1.7 0.0017 P6.5 retina GTGTCTGATA (4) 1.7 0.0017 P10.5 crx- retina GTGTTAACCA (3) 78 0.078 P10.5 crx- retina GCTTCCTGTG (8) 1.9 0.0019 P10.5 crx- retina GGCACCATCT (3) 1.9 0.0019 P10.5 crx- retina GGGGAAATGG (9) 1.9 0.0019 P10.5 crx- retina GTGATGGCGG 1.9 0.0019 P10.5 crx+ retina GTGTTAACCA (3) 25 0.025 P10.5 crx+ retina GATGTAGTGT 1.9 0.0019 P10.5 crx+ retina GCAGGCATTT 1.9 0.0019 P10.5 crx+ retina GCTTCCTGTG (8) 1.9 0.0019 Adult retinal GTGTTAACCA (3) 16.7 0.0167 Adult retinal GGCACCATCT (3) 5.6 0.0056 Adult retinal GATGTAGTGT 3.7 0.0037 Adult retinal GCTTCCTGTG (8) 1.9 0.0019 ONL GTGTTAACCA (3) 9.6 0.0096 ONL GTGATGGCGG 3.8 0.0038 ONL GATGTAGTGT 1.9 0.0019