Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.7562	4931428A05Rik	RIKEN cDNA 4931428A05 gene	1		67540
Mm.7562	Col6a3	procollagen, type VI, alpha 3	1	1 53.9 cM	12835
Gene Ontology	cell adhesion | collagen | extracellular matrix structural constituent conferring tensile strength
Human Homolog	COL6A3[collagen, type VI, alpha 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 116 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC AGAAGTGTTT (3) 6.5 0.0065 P8 Cb GC CCAGCCCCTC (5) 3.3 0.0033 P8 Cb GC AACAAACAAA (8) 1.6 0.0016 P8 Cb GC CAAACACCGT (6) 1.6 0.0016 P8 Cb GC CTGGGAAAGT (6) 1.6 0.0016 P8 Cb GC TGAAACCAGC (4) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma AACTGCAGAG (6) 11.6 0.0116 Cb medulloblastoma AACAAACAAA (8) 2.3 0.0023 Cb medulloblastoma GTTCCCAGTT (3) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture AGAAGTGTTT (3) 16 0.016 P8 GC+1d culture CCAGCCCCTC (5) 14.8 0.0148 P8 GC+1d culture AACAAACAAA (8) 8 0.008 P8 GC+1d culture AACTGCAGAG (6) 5.7 0.0057 P8 GC+1d culture CAAACACCGT (6) 4.6 0.0046 P8 GC+1d culture GTTCCCAGTT (3) 2.3 0.0023 P8 GC+1d culture CTGGGAAAGT (6) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture AGAAGTGTTT (3) 18.7 0.0187 P8 GC+SHH+1d culture AACAAACAAA (8) 5.9 0.0059 P8 GC+SHH+1d culture CAAACACCGT (6) 4.7 0.0047 P8 GC+SHH+1d culture AACTGCAGAG (6) 3.5 0.0035 P8 GC+SHH+1d culture CCAGCCCCTC (5) 2.3 0.0023 P8 GC+SHH+1d culture GTTCCCAGTT (3) 2.3 0.0023 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts CCAGCCCCTC (5) 14 0.014 3T3 fibroblasts CAAACACCGT (6) 10.5 0.0105 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex AGAAGTGTTT (3) 9.9 0.0099 E15 cortex GTTCCCAGTT (3) 9.9 0.0099 E15 cortex AACTGCAGAG (6) 4.9 0.0049 E15 cortex CCAGCCCCTC (5) 4.9 0.0049 E15 cortex GAAATGAAGA (7) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex CCAGCCCCTC (5) 13.6 0.0136 P1 cortex AACTGCAGAG (6) 9.1 0.0091 P1 cortex AACAAACAAA (8) 4.5 0.0045 P1 cortex GAAATGAAGA (7) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus CCAGCCCCTC (5) 5.4 0.0054 Hypothalamus AACAAACAAA (8) 3.6 0.0036 Hypothalamus AACTGCAGAG (6) 3.6 0.0036 Hypothalamus CTTTCCTTTG (5) 1.8 0.0018 Hypothalamus GTCTCCAGCA (5) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina AGAAGTGTTT (3) 26.3 0.0263 E12.5 retina CCAGCCCCTC (5) 9.4 0.0094 E12.5 retina AACTGCAGAG (6) 3.8 0.0038 E12.5 retina AACAAACAAA (8) 1.9 0.0019 E12.5 retina GAAATGAAGA (7) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina AGAAGTGTTT (3) 3.6 0.0036 E14.5 retina GTTCCCAGTT (3) 3.6 0.0036 E14.5 retina AACTGCAGAG (6) 1.8 0.0018 E14.5 retina CCAGCCCCTC (5) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina CCAGCCCCTC (5) 12.7 0.0127 E16.5 retina AGAAGTGTTT (3) 10.9 0.0109 E16.5 retina AACAAACAAA (8) 5.4 0.0054 E16.5 retina AACTGCAGAG (6) 5.4 0.0054 E16.5 retina GTTCCCAGTT (3) 1.8 0.0018 E16.5 retina TGAAACCAGC (4) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina CCAGCCCCTC (5) 12.7 0.0127 E18.5 retina AGAAGTGTTT (3) 10.9 0.0109 E18.5 retina AACAAACAAA (8) 3.6 0.0036 E18.5 retina AACTGCAGAG (6) 1.8 0.0018 E18.5 retina CTTTCCTTTG (5) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina AGAAGTGTTT (3) 31.4 0.0314 P0.5 retina AACAAACAAA (8) 3.9 0.0039 P0.5 retina AACTGCAGAG (6) 3.9 0.0039 P0.5 retina CCAGCCCCTC (5) 3.9 0.0039 P0.5 retina GTCTCCAGCA (5) 3.9 0.0039 P0.5 retina CTTTCCTTTG (5) 2 0.002 P0.5 retina GTTCCCAGTT (3) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina AACAAACAAA (8) 10.6 0.0106 P2.5 retina AGAAGTGTTT (3) 10.6 0.0106 P2.5 retina AACTGCAGAG (6) 5.3 0.0053 P2.5 retina CCAGCCCCTC (5) 5.3 0.0053 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina AACTGCAGAG (6) 11.9 0.0119 P4.5 retina AACAAACAAA (8) 9.9 0.0099 P4.5 retina CCAGCCCCTC (5) 9.9 0.0099 P4.5 retina AGAAGTGTTT (3) 4 0.004 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina CCAGCCCCTC (5) 15 0.015 P6.5 retina AGAAGTGTTT (3) 13.3 0.0133 P6.5 retina AACAAACAAA (8) 10 0.01 P6.5 retina AACTGCAGAG (6) 5 0.005 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina AACTGCAGAG (6) 14.9 0.0149 P10.5 crx- retina CCAGCCCCTC (5) 9.3 0.0093 P10.5 crx- retina AACAAACAAA (8) 3.7 0.0037 P10.5 crx- retina CAAACACCGT (6) 3.7 0.0037 P10.5 crx- retina GTTCCCAGTT (3) 3.7 0.0037 P10.5 crx- retina TGAAACCAGC (4) 3.7 0.0037 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina AACTGCAGAG (6) 11.5 0.0115 P10.5 crx+ retina CCAGCCCCTC (5) 5.8 0.0058 P10.5 crx+ retina AGAAGTGTTT (3) 3.8 0.0038 P10.5 crx+ retina GTTCCCAGTT (3) 3.8 0.0038 P10.5 crx+ retina AACAAACAAA (8) 1.9 0.0019 P10.5 crx+ retina GAAATGAAGA (7) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal CCAGCCCCTC (5) 13 0.013 Adult retinal CAAACACCGT (6) 7.4 0.0074 Adult retinal AGAAGTGTTT (3) 5.6 0.0056 Adult retinal CTGGGAAAGT (6) 5.6 0.0056 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL AACAAACAAA (8) 3.8 0.0038 ONL AACTGCAGAG (6) 3.8 0.0038 ONL CCAGCCCCTC (5) 3.8 0.0038