Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.7883	Apc	adenomatosis polyposis coli	18	18 B1 (18 15.0 cM)	11789
Gene Ontology	anterior/posterior pattern formation | axis specification | beta-catenin binding | cytoplasm | dorsal/ventral pattern formation | microtubule binding | negative regulation of cell cycle | nucleus | peroxidase activity | protein binding | regulation of cell cycle | Wnt receptor signaling pathway | Wnt receptor signaling pathway
Human Homolog	APC[adenomatosis polyposis coli]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 9 In Situ Hybridization Images

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SAGE Tags

Total 95 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGTGCAGAG (2) 9.8 0.0098 P8 Cb GC AAAAATAAAA (20) 8.2 0.0082 P8 Cb GC GCGTTTGGAG (3) 6.5 0.0065 P8 Cb GC TGGATCAGCC 3.3 0.0033 P8 Cb GC GTCAGATAAT 1.6 0.0016 Cb medulloblastoma AAAAATAAAA (20) 20.8 0.0208 Cb medulloblastoma GCGTTTGGAG (3) 9.2 0.0092 Cb medulloblastoma GGCACTGTCC (8) 4.6 0.0046 Cb medulloblastoma GTGTGCAGAG (2) 2.3 0.0023 Cb medulloblastoma TGCATCCTGT (2) 2.3 0.0023 Cb medulloblastoma TGGATCAGCC 2.3 0.0023 P8 GC+1d culture AAAAATAAAA (20) 11.4 0.0114 P8 GC+1d culture GCGTTTGGAG (3) 5.7 0.0057 P8 GC+1d culture GGCACTGTCC (8) 4.6 0.0046 P8 GC+1d culture GTCAGATAAT 2.3 0.0023 P8 GC+1d culture GTGTGCAGAG (2) 2.3 0.0023 P8 GC+1d culture TGGATCAGCC 1.1 0.0011 P8 GC+SHH+1d culture GCGTTTGGAG (3) 7 0.007 P8 GC+SHH+1d culture AAAAATAAAA (20) 5.9 0.0059 P8 GC+SHH+1d culture GTGTGCAGAG (2) 4.7 0.0047 P8 GC+SHH+1d culture GGCACTGTCC (8) 3.5 0.0035 P8 GC+SHH+1d culture GTCAGATAAT 2.3 0.0023 P8 GC+SHH+1d culture TGGATCAGCC 2.3 0.0023 3T3 fibroblasts GCGTTTGGAG (3) 7 0.007 3T3 fibroblasts GAGGGAAGGA (2) 3.5 0.0035 3T3 fibroblasts GTGTGCAGAG (2) 3.5 0.0035 E15 cortex GGCACTGTCC (8) 14.8 0.0148 E15 cortex GTGTGCAGAG (2) 9.9 0.0099 E15 cortex GCGTTTGGAG (3) 4.9 0.0049 P1 cortex AAAAATAAAA (20) 4.5 0.0045 P1 cortex GTGTGCAGAG (2) 4.5 0.0045 Hypothalamus AAAAATAAAA (20) 14.5 0.0145 Hypothalamus GCGTTTGGAG (3) 3.6 0.0036 Hypothalamus AATCAGAATA (2) 1.8 0.0018 Hypothalamus GAGGGAAGGA (2) 1.8 0.0018 Hypothalamus TGGATCAGCC 1.8 0.0018 E12.5 retina GCGTTTGGAG (3) 5.6 0.0056 E12.5 retina AAAAATAAAA (20) 1.9 0.0019 E12.5 retina AATCAGAATA (2) 1.9 0.0019 E12.5 retina GAGGGAAGGA (2) 1.9 0.0019 E12.5 retina GGCACTGTCC (8) 1.9 0.0019 E12.5 retina GGGAACCACA (4) 1.9 0.0019 E12.5 retina GTGTGCAGAG (2) 1.9 0.0019 E14.5 retina AAAAATAAAA (20) 16.4 0.0164 E14.5 retina GGCACTGTCC (8) 1.8 0.0018 E16.5 retina AAAAATAAAA (20) 9.1 0.0091 E16.5 retina GTGTGCAGAG (2) 1.8 0.0018 E18.5 retina GCGTTTGGAG (3) 9.1 0.0091 E18.5 retina AAAAATAAAA (20) 7.3 0.0073 E18.5 retina GGGAAAGGAA (3) 1.8 0.0018 E18.5 retina GTGTGCAGAG (2) 1.8 0.0018 E18.5 retina TGCATCCTGT (2) 1.8 0.0018 E18.5 retina TGGATCAGCC 1.8 0.0018 P0.5 retina GGCACTGTCC (8) 5.9 0.0059 P0.5 retina TGGATCAGCC 5.9 0.0059 P0.5 retina AAAAATAAAA (20) 3.9 0.0039 P0.5 retina GCGTTTGGAG (3) 3.9 0.0039 P0.5 retina GTCAGATAAT 3.9 0.0039 P0.5 retina GTGTGCAGAG (2) 2 0.002 P0.5 retina TGCATCCTGT (2) 2 0.002 P2.5 retina GCGTTTGGAG (3) 7 0.007 P2.5 retina GGCACTGTCC (8) 7 0.007 P2.5 retina AAAAATAAAA (20) 1.8 0.0018 P2.5 retina GGGAAAGGAA (3) 1.8 0.0018 P2.5 retina GTGTGCAGAG (2) 1.8 0.0018 P2.5 retina TGCATCCTGT (2) 1.8 0.0018 P2.5 retina TGGATCAGCC 1.8 0.0018 P4.5 retina GCGTTTGGAG (3) 17.8 0.0178 P4.5 retina AAAAATAAAA (20) 5.9 0.0059 P4.5 retina GTCAGATAAT 2 0.002 P4.5 retina TGCATCCTGT (2) 2 0.002 P6.5 retina AAAAATAAAA (20) 13.3 0.0133 P6.5 retina GCGTTTGGAG (3) 13.3 0.0133 P6.5 retina GGCACTGTCC (8) 13.3 0.0133 P10.5 crx- retina GTGTGCAGAG (2) 3.7 0.0037 P10.5 crx- retina AAAAATAAAA (20) 1.9 0.0019 P10.5 crx- retina GCGTTTGGAG (3) 1.9 0.0019 P10.5 crx- retina GGCACTGTCC (8) 1.9 0.0019 P10.5 crx- retina GTCAGATAAT 1.9 0.0019 P10.5 crx- retina TGGATCAGCC 1.9 0.0019 P10.5 crx+ retina GCGTTTGGAG (3) 15.4 0.0154 P10.5 crx+ retina GTCAGATAAT 5.8 0.0058 P10.5 crx+ retina AAAAATAAAA (20) 3.8 0.0038 P10.5 crx+ retina GGGAACCACA (4) 3.8 0.0038 P10.5 crx+ retina TGCATCCTGT (2) 3.8 0.0038 P10.5 crx+ retina GAGGGAAGGA (2) 1.9 0.0019 P10.5 crx+ retina GGCACTGTCC (8) 1.9 0.0019 Adult retinal GCGTTTGGAG (3) 5.6 0.0056 Adult retinal AAAAATAAAA (20) 1.9 0.0019 Adult retinal GGCACTGTCC (8) 1.9 0.0019 Adult retinal GGGAAAGGAA (3) 1.9 0.0019 Adult retinal GTGTGCAGAG (2) 1.9 0.0019 ONL GCGTTTGGAG (3) 9.6 0.0096 ONL GTGTGCAGAG (2) 1.9 0.0019 ONL TGCATCCTGT (2) 1.9 0.0019