Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.7892	Rfx1	regulatory factor X, 1 (influences HLA class II expression)	8	8 C2 (8 38.0 cM)	19724
Gene Ontology	DNA binding | nucleus | regulation of transcription | regulation of transcription, DNA-dependent | transcription regulator activity
Human Homolog	RFX1[regulatory factor X, 1 (influences HLA class II expression)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 9 In Situ Hybridization Images

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SAGE Tags

Total 32 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  Cb medulloblastoma GCCTCCTTCC (6) 2.3 0.0023 Cb medulloblastoma GGCCTCCCTT (2) 2.3 0.0023 P8 GC+1d culture GGCCTCCCTT (2) 1.1 0.0011 P8 GC+SHH+1d culture GGCCTCCCTT (2) 1.2 0.0012 P8 GC+SHH+1d culture TGCAGGGCAC (3) 1.2 0.0012 3T3 fibroblasts GGCATCCCTT (4) 3.5 0.0035 E15 cortex GGAGAGTTTG (4) 4.9 0.0049 E15 cortex GGCATCCCTT (4) 4.9 0.0049 E15 cortex TGCAGGGCAC (3) 4.9 0.0049 Hypothalamus GGAGAGTTTG (4) 1.8 0.0018 Hypothalamus GGCATCCCTT (4) 1.8 0.0018 Hypothalamus GGCCTCCCTT (2) 1.8 0.0018 Hypothalamus GGGAGTGTGC 1.8 0.0018 E12.5 retina GGCCTCCCTT (2) 1.9 0.0019 E16.5 retina GGCCTCCCTT (2) 1.8 0.0018 E18.5 retina TGCAGGGCAC (3) 3.6 0.0036 E18.5 retina GGGAGTGTGC 1.8 0.0018 P0.5 retina GGCCTCCCTT (2) 3.9 0.0039 P0.5 retina GCCTCCTTCC (6) 2 0.002 P0.5 retina TGCAGGGCAC (3) 2 0.002 P2.5 retina GGCCTCCCTT (2) 8.8 0.0088 P2.5 retina TGCAGGGCAC (3) 1.8 0.0018 P4.5 retina GGCCTCCCTT (2) 7.9 0.0079 P4.5 retina GCCTCCTTCC (6) 2 0.002 P4.5 retina TGCAGGGCAC (3) 2 0.002 P6.5 retina GGCCTCCCTT (2) 5 0.005 P6.5 retina GGGAGTGTGC 1.7 0.0017 P10.5 crx- retina GGCCTCCCTT (2) 1.9 0.0019 P10.5 crx+ retina GGCCTCCCTT (2) 5.8 0.0058 Adult retinal GGCCTCCCTT (2) 1.9 0.0019 ONL GGCCTCCCTT (2) 9.6 0.0096 ONL GGAGAGTTTG (4) 3.8 0.0038