Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.8211	Pja1	praja1, RING-H2 motif containing	X	X 36.6 cM	18744
Gene Ontology	ligase activity | protein binding | protein catabolism | protein ubiquitination | ubiquitin ligase complex | ubiquitin-protein ligase activity | zinc ion binding
Human Homolog	PJA1[praja 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 53 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGAGCGAAA (2) GGTTAATGTT (2) GTCCCCTCCC 26.1 0.0261 Cb medulloblastoma CAACAAAAGT (3) GGGAGCGAAA (2) GGTTAATGTT (2) TTCCCTCCCC (2) 55.5 0.0555 P8 GC+1d culture GGGAGCGAAA (2) GGTTAATGTT (2) 30.8 0.0308 P8 GC+SHH+1d culture GGGAGCGAAA (2) GGTTAATGTT (2) TGAAAATGGT (2) 28.1 0.0281 3T3 fibroblasts AGCCACCAGG (2) GGGAGCGAAA (2) GTCCCCTCCC 14 0.014 E15 cortex GGGAGCGAAA (2) GGTTAATGTT (2) TGAAAATGGT (2) TTCCCTCCCC (2) 69.1 0.0691 P1 cortex GGGAGCGAAA (2) 9.1 0.0091 Hypothalamus GGGAGCGAAA (2) GGTTAATGTT (2) TGAAAATGGT (2) 21.7 0.0217 E12.5 retina GGGAGCGAAA (2) GGTTAATGTT (2) 22.6 0.0226 E14.5 retina GGGAGCGAAA (2) GGTTAATGTT (2) 34.6 0.0346 E16.5 retina GGGAGCGAAA (2) GGTTAATGTT (2) TGAAAATGGT (2) TTCCCTCCCC (2) 39.8 0.0398 E18.5 retina CAACAAAAGT (3) GGGAGCGAAA (2) GGTTAATGTT (2) 27.3 0.0273 P0.5 retina GGGAGCGAAA (2) 25.5 0.0255 P2.5 retina GGGAGCGAAA (2) GGTTAATGTT (2) 24.7 0.0247 P4.5 retina CAACAAAAGT (3) GGGAGCGAAA (2) GGTTAATGTT (2) 33.7 0.0337 P6.5 retina GGGAGCGAAA (2) GGTTAATGTT (2) 13.3 0.0133 P10.5 crx- retina GGGAGCGAAA (2) GGTTAATGTT (2) TGAAAATGGT (2) TTCCCTCCCC (2) 26.1 0.0261 P10.5 crx+ retina AGCCACCAGG (2) GGGAGCGAAA (2) GGTTAATGTT (2) 19.2 0.0192 Adult retinal AGCCACCAGG (2) GGGAGCGAAA (2) GGTTAATGTT (2) 16.8 0.0168 ONL GGGAGCGAAA (2) 1.9 0.0019