Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.8681	Ptpn11	protein tyrosine phosphatase, non-receptor type 11	5		19247
Gene Ontology	activation of MAPK | axonogenesis | cell junction | DNA damage response, signal transduction resulting in cell cycle arrest | hydrolase activity | intracellular signaling cascade | membrane fraction | NGF receptor signaling pathway | non-membrane spanning protein tyrosine phosphatase activity | phosphoprotein phosphatase activity | protein amino acid dephosphorylation | protein binding | protein binding | protein-tyrosine-phosphatase activity | receptor activity | regulation of protein-nucleus export | signal transduction | stress fibers
Human Homolog	PTPN11[protein tyrosine phosphatase, non-receptor type 11 (Noonan syndrome 1)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 54 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGTGTATCTG 8.2 0.0082 P8 Cb GC GCCTGGTGGG (2) 4.9 0.0049 P8 Cb GC GCTGTCCAGC 3.3 0.0033 P8 Cb GC GCAGCTTCCT (2) 1.6 0.0016 Cb medulloblastoma AGTGTATCTG 16.2 0.0162 Cb medulloblastoma GCCTGGTGGG (2) 4.6 0.0046 Cb medulloblastoma GCTGTCCAGC 2.3 0.0023 P8 GC+1d culture GCCTGGTGGG (2) 3.4 0.0034 P8 GC+1d culture AGTGTATCTG 2.3 0.0023 P8 GC+1d culture GCTGAAAGAA 1.1 0.0011 P8 GC+SHH+1d culture AGTGTATCTG 5.9 0.0059 P8 GC+SHH+1d culture GCCTGGTGGG (2) 5.9 0.0059 P8 GC+SHH+1d culture CAGCAGCAGA (2) 1.2 0.0012 P8 GC+SHH+1d culture GCTGTCCAGC 1.2 0.0012 3T3 fibroblasts AGTGTATCTG 3.5 0.0035 3T3 fibroblasts GCCTGGTGGG (2) 3.5 0.0035 3T3 fibroblasts GCTGTCCAGC 3.5 0.0035 E15 cortex GCCTGGTGGG (2) 19.8 0.0198 E15 cortex GCTGTCCAGC 9.9 0.0099 E15 cortex GCAGCTTCCT (2) 4.9 0.0049 P1 cortex GCCTGGTGGG (2) 18.2 0.0182 Hypothalamus GCCTGGTGGG (2) 29 0.029 E12.5 retina AGTGTATCTG 3.8 0.0038 E12.5 retina GCCTGGTGGG (2) 1.9 0.0019 E12.5 retina GCTGAAAGAA 1.9 0.0019 E14.5 retina GCCTGGTGGG (2) 10.9 0.0109 E16.5 retina GCCTGGTGGG (2) 14.5 0.0145 E16.5 retina AGTGTATCTG 3.6 0.0036 E18.5 retina GCCTGGTGGG (2) 18.2 0.0182 E18.5 retina AGTGTATCTG 3.6 0.0036 E18.5 retina GCTGAAAGAA 1.8 0.0018 P0.5 retina GCCTGGTGGG (2) 7.9 0.0079 P0.5 retina AGTGTATCTG 5.9 0.0059 P0.5 retina GCTGAAAGAA 2 0.002 P2.5 retina GCCTGGTGGG (2) 24.6 0.0246 P2.5 retina GCTGAAAGAA 5.3 0.0053 P2.5 retina AGTGTATCTG 3.5 0.0035 P4.5 retina GCCTGGTGGG (2) 39.6 0.0396 P4.5 retina AGTGTATCTG 2 0.002 P4.5 retina GCAGCTTCCT (2) 2 0.002 P6.5 retina AGTGTATCTG 6.7 0.0067 P6.5 retina GCCTGGTGGG (2) 5 0.005 P6.5 retina CAGCAGCAGA (2) 1.7 0.0017 P6.5 retina GCTGAAAGAA 1.7 0.0017 P10.5 crx- retina GCCTGGTGGG (2) 9.3 0.0093 P10.5 crx- retina AGTGTATCTG 3.7 0.0037 P10.5 crx+ retina AGTGTATCTG 7.7 0.0077 P10.5 crx+ retina GCCTGGTGGG (2) 5.8 0.0058 P10.5 crx+ retina GCTGAAAGAA 3.8 0.0038 P10.5 crx+ retina CAGCAGCAGA (2) 1.9 0.0019 Adult retinal AGTGTATCTG 7.4 0.0074 Adult retinal GCCTGGTGGG (2) 1.9 0.0019 ONL GCTGAAAGAA 3.8 0.0038 ONL CAGCAGCAGA (2) 1.9 0.0019