Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.87639	Hbp1	high mobility group box transcription factor 1	12	12 A2	73389
Mm.87639	Cog5	component of oligomeric golgi complex 5	12		238123
Gene Ontology	Golgi apparatus | inter-Golgi cisterna transport | molecular_function unknown
Human Homolog	COG5[component of oligomeric golgi complex 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 99 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCAAAAAAAA (60) 17.9 0.0179 P8 Cb GC TTACTTACCA (4) 9.8 0.0098 P8 Cb GC AATAAACTCA (5) 3.3 0.0033 P8 Cb GC TGGGTGCTAG (16) 3.3 0.0033 P8 Cb GC CTGTACCACA (5) 1.6 0.0016 P8 Cb GC GCACAAGAAC (5) 1.6 0.0016 P8 Cb GC GCCCTGGCAG (10) 1.6 0.0016 P8 Cb GC TCTTAAAAAA (9) 1.6 0.0016 Cb medulloblastoma TCAAAAAAAA (60) 99.4 0.0994 Cb medulloblastoma AATAAACTCA (5) 16.2 0.0162 Cb medulloblastoma GCCCTGGCAG (10) 2.3 0.0023 P8 GC+1d culture TCAAAAAAAA (60) 17.1 0.0171 P8 GC+1d culture AATAAACTCA (5) 11.4 0.0114 P8 GC+1d culture TTACTTACCA (4) 6.8 0.0068 P8 GC+1d culture CTGTACCACA (5) 3.4 0.0034 P8 GC+1d culture GCCCTGGCAG (10) 3.4 0.0034 P8 GC+1d culture AGGAAGAGAA (10) 1.1 0.0011 P8 GC+1d culture GCACAAGAAC (5) 1.1 0.0011 P8 GC+SHH+1d culture TCAAAAAAAA (60) 51.5 0.0515 P8 GC+SHH+1d culture TTACTTACCA (4) 9.4 0.0094 P8 GC+SHH+1d culture AATAAACTCA (5) 8.2 0.0082 P8 GC+SHH+1d culture CTGTACCACA (5) 2.3 0.0023 P8 GC+SHH+1d culture GCCCTGGCAG (10) 2.3 0.0023 3T3 fibroblasts CTGTACCACA (5) 14 0.014 3T3 fibroblasts TCAAAAAAAA (60) 7 0.007 3T3 fibroblasts TTACTTACCA (4) 3.5 0.0035 E15 cortex TCAAAAAAAA (60) 14.8 0.0148 E15 cortex GCCCTGGCAG (10) 9.9 0.0099 E15 cortex AATAAACTCA (5) 4.9 0.0049 E15 cortex TGGGTGCTAG (16) 4.9 0.0049 P1 cortex TCAAAAAAAA (60) 22.7 0.0227 P1 cortex AGGAAGAGAA (10) 4.5 0.0045 Hypothalamus TCAAAAAAAA (60) 39.8 0.0398 Hypothalamus AATAAACTCA (5) 3.6 0.0036 Hypothalamus AAGAGAGTGT (3) 1.8 0.0018 Hypothalamus GCCCTGGCAG (10) 1.8 0.0018 Hypothalamus TGGGTGCTAG (16) 1.8 0.0018 Hypothalamus TTACTTACCA (4) 1.8 0.0018 E12.5 retina TCAAAAAAAA (60) 18.8 0.0188 E12.5 retina AATAAACTCA (5) 11.3 0.0113 E12.5 retina CTGTACCACA (5) 3.8 0.0038 E12.5 retina TTACTTACCA (4) 1.9 0.0019 E14.5 retina TCAAAAAAAA (60) 41.9 0.0419 E14.5 retina AATAAACTCA (5) 12.8 0.0128 E14.5 retina TTACTTACCA (4) 5.5 0.0055 E14.5 retina TGGGTGCTAG (16) 3.6 0.0036 E16.5 retina TCAAAAAAAA (60) 18.1 0.0181 E16.5 retina AATAAACTCA (5) 16.3 0.0163 E16.5 retina TTACTTACCA (4) 7.2 0.0072 E16.5 retina CTGTACCACA (5) 5.4 0.0054 E16.5 retina AAGAGAGTGT (3) 1.8 0.0018 E16.5 retina GCACAAGAAC (5) 1.8 0.0018 E18.5 retina TCAAAAAAAA (60) 49.1 0.0491 E18.5 retina AATAAACTCA (5) 21.8 0.0218 E18.5 retina GCCCTGGCAG (10) 1.8 0.0018 E18.5 retina TCTTAAAAAA (9) 1.8 0.0018 P0.5 retina TCAAAAAAAA (60) 31.4 0.0314 P0.5 retina AATAAACTCA (5) 5.9 0.0059 P0.5 retina TTACTTACCA (4) 3.9 0.0039 P2.5 retina TCAAAAAAAA (60) 35.2 0.0352 P2.5 retina TTACTTACCA (4) 12.3 0.0123 P2.5 retina TGGGTGCTAG (16) 7 0.007 P2.5 retina AATAAACTCA (5) 5.3 0.0053 P2.5 retina GCCCTGGCAG (10) 3.5 0.0035 P2.5 retina TCTTAAAAAA (9) 3.5 0.0035 P2.5 retina GCACAAGAAC (5) 1.8 0.0018 P4.5 retina TCAAAAAAAA (60) 37.6 0.0376 P4.5 retina AATAAACTCA (5) 17.8 0.0178 P4.5 retina CTGTACCACA (5) 4 0.004 P4.5 retina TCTTAAAAAA (9) 2 0.002 P4.5 retina TTACTTACCA (4) 2 0.002 P6.5 retina TCAAAAAAAA (60) 31.7 0.0317 P6.5 retina TTACTTACCA (4) 6.7 0.0067 P6.5 retina AATAAACTCA (5) 5 0.005 P6.5 retina AAGAGAGTGT (3) 1.7 0.0017 P6.5 retina AGGAAGAGAA (10) 1.7 0.0017 P6.5 retina TCTTAAAAAA (9) 1.7 0.0017 P10.5 crx- retina AATAAACTCA (5) 16.7 0.0167 P10.5 crx- retina TCAAAAAAAA (60) 14.9 0.0149 P10.5 crx- retina TTACTTACCA (4) 14.9 0.0149 P10.5 crx- retina AAGAGAGTGT (3) 3.7 0.0037 P10.5 crx- retina CTGTACCACA (5) 1.9 0.0019 P10.5 crx- retina TGGGTGCTAG (16) 1.9 0.0019 P10.5 crx+ retina TCAAAAAAAA (60) 17.3 0.0173 P10.5 crx+ retina TTACTTACCA (4) 9.6 0.0096 P10.5 crx+ retina AATAAACTCA (5) 5.8 0.0058 P10.5 crx+ retina TGGGTGCTAG (16) 5.8 0.0058 P10.5 crx+ retina CTGTACCACA (5) 3.8 0.0038 P10.5 crx+ retina GCCCTGGCAG (10) 3.8 0.0038 P10.5 crx+ retina GCACAAGAAC (5) 1.9 0.0019 Adult retinal TCAAAAAAAA (60) 20.4 0.0204 Adult retinal CTGTACCACA (5) 3.7 0.0037 Adult retinal GCCCTGGCAG (10) 1.9 0.0019 Adult retinal TCTTAAAAAA (9) 1.9 0.0019 Adult retinal TGGGTGCTAG (16) 1.9 0.0019 ONL AATAAACTCA (5) 15.3 0.0153 ONL TCAAAAAAAA (60) 15.3 0.0153 ONL TGGGTGCTAG (16) 3.8 0.0038 ONL TCTTAAAAAA (9) 1.9 0.0019