Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.88212	Tuba6	tubulin, alpha 6	15		22146
Gene Ontology	microtubule | microtubule-based movement | microtubule-based process | mitochondrion | structural constituent of cytoskeleton | structural molecule activity
Human Homolog	TUBA6[tubulin alpha 6]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 191 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGTCTCAAA (5) 388.3 0.3883 P8 Cb GC GCTGCCCTAG (2) 311.6 0.3116 P8 Cb GC GCATCCAGCC (3) 62 0.062 P8 Cb GC TGCCCCGGGC (3) 21.2 0.0212 P8 Cb GC TGCTGCCATT (4) 14.7 0.0147 P8 Cb GC TTTACACTGC (3) 6.5 0.0065 P8 Cb GC GCTTGCTGCC (8) 4.9 0.0049 P8 Cb GC GCGAGGGTCA (2) 3.3 0.0033 P8 Cb GC GTTGCTGCTT (2) 3.3 0.0033 P8 Cb GC AGCTCACCAA (4) 1.6 0.0016 P8 Cb GC CAAACAGCTC 1.6 0.0016 P8 Cb GC CTGAGCAACA (4) 1.6 0.0016 P8 Cb GC GTAGACAATG (2) 1.6 0.0016 P8 Cb GC GTAGGCTTTC (4) 1.6 0.0016 Cb medulloblastoma ATGTCTCAAA (5) 145.7 0.1457 Cb medulloblastoma GCTGCCCTAG (2) 83.2 0.0832 Cb medulloblastoma TGCCCCGGGC (3) 9.2 0.0092 Cb medulloblastoma GCATCCAGCC (3) 4.6 0.0046 Cb medulloblastoma AGCTCACCAA (4) 2.3 0.0023 Cb medulloblastoma GCGAGGGTCA (2) 2.3 0.0023 Cb medulloblastoma GTAGACAATG (2) 2.3 0.0023 Cb medulloblastoma TTTACACTGC (3) 2.3 0.0023 P8 GC+1d culture GCTGCCCTAG (2) 552.5 0.5525 P8 GC+1d culture ATGTCTCAAA (5) 137 0.137 P8 GC+1d culture TGCTGCCATT (4) 9.1 0.0091 P8 GC+1d culture AGCTCACCAA (4) 4.6 0.0046 P8 GC+1d culture GTAGGCTTTC (4) 3.4 0.0034 P8 GC+1d culture CTGAGCAACA (4) 2.3 0.0023 P8 GC+1d culture GCTTGCTGCC (8) 2.3 0.0023 P8 GC+1d culture GTAGACAATG (2) 2.3 0.0023 P8 GC+1d culture GCATCCAGCC (3) 1.1 0.0011 P8 GC+1d culture GCGAGGGTCA (2) 1.1 0.0011 P8 GC+1d culture GGCTTCTTGT (2) 1.1 0.0011 P8 GC+1d culture TGCCCCGGGC (3) 1.1 0.0011 P8 GC+SHH+1d culture GCTGCCCTAG (2) 380.5 0.3805 P8 GC+SHH+1d culture ATGTCTCAAA (5) 291.6 0.2916 P8 GC+SHH+1d culture TGCTGCCATT (4) 23.4 0.0234 P8 GC+SHH+1d culture AGCTCACCAA (4) 14.1 0.0141 P8 GC+SHH+1d culture CTGAGCAACA (4) 4.7 0.0047 P8 GC+SHH+1d culture TTTACACTGC (3) 3.5 0.0035 P8 GC+SHH+1d culture CACACAGCTC (2) 2.3 0.0023 P8 GC+SHH+1d culture ATAGCAACGG 1.2 0.0012 P8 GC+SHH+1d culture GCATCCAGCC (3) 1.2 0.0012 P8 GC+SHH+1d culture GCTTGCTGCC (8) 1.2 0.0012 P8 GC+SHH+1d culture GGCTTCTTGT (2) 1.2 0.0012 P8 GC+SHH+1d culture GTAGACAATG (2) 1.2 0.0012 P8 GC+SHH+1d culture GTAGGCTTTC (4) 1.2 0.0012 P8 GC+SHH+1d culture GTTGCTGCTT (2) 1.2 0.0012 P8 GC+SHH+1d culture TGCCCCGGGC (3) 1.2 0.0012 3T3 fibroblasts GCTGCCCTAG (2) 266.4 0.2664 3T3 fibroblasts ATGTCTCAAA (5) 112.2 0.1122 3T3 fibroblasts TGCTGCCATT (4) 45.6 0.0456 3T3 fibroblasts AGCTCACCAA (4) 7 0.007 3T3 fibroblasts ATAGCAACGG 7 0.007 3T3 fibroblasts GTAGACAATG (2) 7 0.007 3T3 fibroblasts CTGAGCAACA (4) 3.5 0.0035 E15 cortex GCTGCCCTAG (2) 1944.5 1.9445 E15 cortex ATGTCTCAAA (5) 59.4 0.0594 E15 cortex AGCTCACCAA (4) 19.8 0.0198 E15 cortex TGCCCCGGGC (3) 19.8 0.0198 E15 cortex GCATCCAGCC (3) 9.9 0.0099 E15 cortex CTGAGCAACA (4) 4.9 0.0049 E15 cortex GCGAGGGTCA (2) 4.9 0.0049 E15 cortex GCTTGCTGCC (8) 4.9 0.0049 E15 cortex GGCTTCTTGT (2) 4.9 0.0049 E15 cortex TGCTGCCATT (4) 4.9 0.0049 P1 cortex GCTGCCCTAG (2) 1154.5 1.1545 P1 cortex ATGTCTCAAA (5) 150 0.15 P1 cortex AGCTCACCAA (4) 4.5 0.0045 P1 cortex CACACAGCTC (2) 4.5 0.0045 P1 cortex GCATCCAGCC (3) 4.5 0.0045 P1 cortex GCTTGCTGCC (8) 4.5 0.0045 P1 cortex GGCTTCTTGT (2) 4.5 0.0045 P1 cortex TGCCCCGGGC (3) 4.5 0.0045 P1 cortex TTTACACTGC (3) 4.5 0.0045 Hypothalamus ATGTCTCAAA (5) 255.4 0.2554 Hypothalamus GCTGCCCTAG (2) 41.7 0.0417 Hypothalamus CTGAGCAACA (4) 9.1 0.0091 Hypothalamus AGCTCACCAA (4) 5.4 0.0054 Hypothalamus GCGAGGGTCA (2) 5.4 0.0054 Hypothalamus GTAGACAATG (2) 3.6 0.0036 Hypothalamus TGCCCCGGGC (3) 3.6 0.0036 Hypothalamus CAAACAGCTC 1.8 0.0018 Hypothalamus GTAGGCTTTC (4) 1.8 0.0018 Hypothalamus GTTGCTGCTT (2) 1.8 0.0018 Hypothalamus TTTACACTGC (3) 1.8 0.0018 E12.5 retina ATGTCTCAAA (5) 779.1 0.7791 E12.5 retina GCTGCCCTAG (2) 200.9 0.2009 E12.5 retina AGCTCACCAA (4) 15 0.015 E12.5 retina TGCTGCCATT (4) 5.6 0.0056 E12.5 retina CTGAGCAACA (4) 3.8 0.0038 E12.5 retina CAAACAGCTC 1.9 0.0019 E12.5 retina GCGAGGGTCA (2) 1.9 0.0019 E12.5 retina TTTACACTGC (3) 1.9 0.0019 E14.5 retina ATGTCTCAAA (5) 723.3 0.7233 E14.5 retina GCTGCCCTAG (2) 78.3 0.0783 E14.5 retina TGCTGCCATT (4) 12.8 0.0128 E14.5 retina AGCTCACCAA (4) 7.3 0.0073 E14.5 retina GCGAGGGTCA (2) 7.3 0.0073 E14.5 retina CTGAGCAACA (4) 3.6 0.0036 E14.5 retina TGCCCCGGGC (3) 3.6 0.0036 E14.5 retina CACACAGCTC (2) 1.8 0.0018 E14.5 retina GTAGACAATG (2) 1.8 0.0018 E16.5 retina ATGTCTCAAA (5) 726.3 0.7263 E16.5 retina GCTGCCCTAG (2) 99.6 0.0996 E16.5 retina AGCTCACCAA (4) 12.7 0.0127 E16.5 retina TGCTGCCATT (4) 12.7 0.0127 E16.5 retina GCATCCAGCC (3) 7.2 0.0072 E16.5 retina GCTTGCTGCC (8) 5.4 0.0054 E16.5 retina GTAGACAATG (2) 5.4 0.0054 E16.5 retina TGCCCCGGGC (3) 5.4 0.0054 E16.5 retina CACACAGCTC (2) 3.6 0.0036 E16.5 retina CTGAGCAACA (4) 3.6 0.0036 E16.5 retina GCGAGGGTCA (2) 1.8 0.0018 E16.5 retina GTAGGCTTTC (4) 1.8 0.0018 E16.5 retina GTTGCTGCTT (2) 1.8 0.0018 E16.5 retina TTTACACTGC (3) 1.8 0.0018 E18.5 retina ATGTCTCAAA (5) 782.2 0.7822 E18.5 retina GCTGCCCTAG (2) 138.2 0.1382 E18.5 retina TGCTGCCATT (4) 23.6 0.0236 E18.5 retina AGCTCACCAA (4) 10.9 0.0109 E18.5 retina GCGAGGGTCA (2) 3.6 0.0036 E18.5 retina TGCCCCGGGC (3) 3.6 0.0036 E18.5 retina TTTACACTGC (3) 3.6 0.0036 E18.5 retina GCATCCAGCC (3) 1.8 0.0018 E18.5 retina GTAGACAATG (2) 1.8 0.0018 P0.5 retina ATGTCTCAAA (5) 351.3 0.3513 P0.5 retina GCTGCCCTAG (2) 351.3 0.3513 P0.5 retina TGCTGCCATT (4) 19.6 0.0196 P0.5 retina AGCTCACCAA (4) 15.7 0.0157 P0.5 retina CTGAGCAACA (4) 3.9 0.0039 P0.5 retina GCGAGGGTCA (2) 3.9 0.0039 P0.5 retina GCTTGCTGCC (8) 3.9 0.0039 P0.5 retina GTAGACAATG (2) 2 0.002 P0.5 retina GTAGGCTTTC (4) 2 0.002 P0.5 retina TGCCCCGGGC (3) 2 0.002 P0.5 retina TTTACACTGC (3) 2 0.002 P2.5 retina ATGTCTCAAA (5) 559.6 0.5596 P2.5 retina GCTGCCCTAG (2) 123.2 0.1232 P2.5 retina AGCTCACCAA (4) 17.6 0.0176 P2.5 retina TGCTGCCATT (4) 14.1 0.0141 P2.5 retina TTTACACTGC (3) 3.5 0.0035 P2.5 retina CTGAGCAACA (4) 1.8 0.0018 P2.5 retina GCATCCAGCC (3) 1.8 0.0018 P2.5 retina GTAGACAATG (2) 1.8 0.0018 P4.5 retina ATGTCTCAAA (5) 487.4 0.4874 P4.5 retina GCTGCCCTAG (2) 99.1 0.0991 P4.5 retina AGCTCACCAA (4) 11.9 0.0119 P4.5 retina TGCTGCCATT (4) 5.9 0.0059 P4.5 retina CACACAGCTC (2) 2 0.002 P4.5 retina CTGAGCAACA (4) 2 0.002 P4.5 retina TTTACACTGC (3) 2 0.002 P6.5 retina ATGTCTCAAA (5) 215.1 0.2151 P6.5 retina GCTGCCCTAG (2) 161.7 0.1617 P6.5 retina AGCTCACCAA (4) 11.7 0.0117 P6.5 retina CTGAGCAACA (4) 6.7 0.0067 P6.5 retina GTTGCTGCTT (2) 5 0.005 P6.5 retina TGCTGCCATT (4) 3.3 0.0033 P6.5 retina GCATCCAGCC (3) 1.7 0.0017 P6.5 retina GCGAGGGTCA (2) 1.7 0.0017 P6.5 retina GCTTGCTGCC (8) 1.7 0.0017 P6.5 retina GTAGACAATG (2) 1.7 0.0017 P6.5 retina TGCCCCGGGC (3) 1.7 0.0017 P6.5 retina TGTACACATA (3) 1.7 0.0017 P10.5 crx- retina GCTGCCCTAG (2) 366 0.366 P10.5 crx- retina ATGTCTCAAA (5) 178.3 0.1783 P10.5 crx- retina CTGAGCAACA (4) 9.3 0.0093 P10.5 crx- retina GCTTGCTGCC (8) 5.6 0.0056 P10.5 crx- retina TGCCCCGGGC (3) 3.7 0.0037 P10.5 crx- retina GCATCCAGCC (3) 1.9 0.0019 P10.5 crx- retina GGCTTCTTGT (2) 1.9 0.0019 P10.5 crx- retina GTAGACAATG (2) 1.9 0.0019 P10.5 crx- retina GTAGGCTTTC (4) 1.9 0.0019 P10.5 crx- retina TTTACACTGC (3) 1.9 0.0019 P10.5 crx+ retina ATGTCTCAAA (5) 265.3 0.2653 P10.5 crx+ retina GCTGCCCTAG (2) 173 0.173 P10.5 crx+ retina AGCTCACCAA (4) 11.5 0.0115 P10.5 crx+ retina GCTTGCTGCC (8) 3.8 0.0038 P10.5 crx+ retina TTTACACTGC (3) 1.9 0.0019 Adult retinal ATGTCTCAAA (5) 105.5 0.1055 Adult retinal GCTGCCCTAG (2) 55.5 0.0555 Adult retinal GGCTTCTTGT (2) 3.7 0.0037 Adult retinal GTAGACAATG (2) 1.9 0.0019 Adult retinal TGCCCCGGGC (3) 1.9 0.0019 Adult retinal TTTACACTGC (3) 1.9 0.0019 ONL ATGTCTCAAA (5) 141.7 0.1417 ONL GCTGCCCTAG (2) 26.8 0.0268 ONL TGTACACATA (3) 3.8 0.0038 ONL AGCTCACCAA (4) 1.9 0.0019 ONL TGCCCCGGGC (3) 1.9 0.0019 ONL TTTACACTGC (3) 1.9 0.0019