Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.88795	H2-Q10	histocompatibility 2, Q region locus 10	17	17 19.22 cM	15007
Gene Ontology	antigen presentation, endogenous antigen | antigen processing, endogenous antigen via MHC class I | defense response | extracellular space | immune response | integral to membrane | membrane | MHC class I receptor activity | plasma membrane
Human Homolog	HLA-B[major histocompatibility complex, class I, B]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 43 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC AGGGGGCTCC (4) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture AGGGGGCTCC (4) 2.3 0.0023 P8 GC+1d culture CTTTAATCAG (2) 2.3 0.0023 P8 GC+1d culture GACTATCCTA (2) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture AGGGGGCTCC (4) 2.3 0.0023 P8 GC+SHH+1d culture CTTTAATCAG (2) 2.3 0.0023 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts AGGGGGCTCC (4) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex AGGGGGCTCC (4) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex CTTTAATCAG (2) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus GACTGGGGGT (10) 5.4 0.0054 Hypothalamus AGGGGGCTCC (4) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina AGGGGGCTCC (4) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina AGGGGGCTCC (4) 3.6 0.0036 E16.5 retina GACTATCCTA (2) 3.6 0.0036 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina AGGGGGCTCC (4) 3.6 0.0036 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina AGGGGGCTCC (4) 3.9 0.0039 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina CTTTAATCAG (2) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina AGGGGGCTCC (4) 1.7 0.0017 P6.5 retina CTTTAATCAG (2) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina AGGGGGCTCC (4) 5.6 0.0056 P10.5 crx- retina GACTATCCTA (2) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina CTTTAATCAG (2) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal AGGGGGCTCC (4) 3.7 0.0037 ONL TGGTTGCTGG (369) 398.4 0.3984