Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.89515	Snx9	sorting nexin 9	17		66616
Gene Ontology	intracellular signaling cascade | protein transport | transport
Human Homolog	SNX9[sorting nexin 9]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 109 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTCTGCTTGT (5) 14.7 0.0147 P8 Cb GC CCTTGCAAAA (5) 6.5 0.0065 P8 Cb GC GTTGGAGCAG (4) 4.9 0.0049 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 Cb medulloblastoma GTCTGCTTGT (5) 9.2 0.0092 Cb medulloblastoma GTTGGAGCAG (4) 6.9 0.0069 Cb medulloblastoma CCTTGCAAAA (5) 4.6 0.0046 Cb medulloblastoma TAGGGAAAAA (7) 4.6 0.0046 Cb medulloblastoma TAGAAACCAA 2.3 0.0023 Cb medulloblastoma TCTTACGCTC (3) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture GTCTGCTTGT (5) 10.3 0.0103 P8 GC+1d culture TAGAAACCAA 6.8 0.0068 P8 GC+1d culture GTTGGAGCAG (4) 4.6 0.0046 P8 GC+1d culture CCTTGCAAAA (5) 2.3 0.0023 P8 GC+1d culture GCCACCAAGG (4) 2.3 0.0023 P8 GC+1d culture CACACGCACA (15) 1.1 0.0011 P8 GC+SHH+1d culture GTCTGCTTGT (5) 12.9 0.0129 P8 GC+SHH+1d culture GTTGGAGCAG (4) 10.5 0.0105 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture TAGAAACCAA 4.7 0.0047 P8 GC+SHH+1d culture CCTTGCAAAA (5) 2.3 0.0023 P8 GC+SHH+1d culture GCCACCAAGG (4) 1.2 0.0012 P8 GC+SHH+1d culture TCTTACGCTC (3) 1.2 0.0012 3T3 fibroblasts TCTTACGCTC (3) 7 0.007 3T3 fibroblasts GTCTGCTTGT (5) 3.5 0.0035 3T3 fibroblasts GTTGGAGCAG (4) 3.5 0.0035 3T3 fibroblasts TAGAAACCAA 3.5 0.0035 E15 cortex GTTGGAGCAG (4) 14.8 0.0148 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex GTCTGCTTGT (5) 4.5 0.0045 P1 cortex TAGAAACCAA 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus TAGAAACCAA 3.6 0.0036 Hypothalamus CACACGCACA (15) 1.8 0.0018 Hypothalamus CCTTGCAAAA (5) 1.8 0.0018 Hypothalamus GCCACCAAGG (4) 1.8 0.0018 Hypothalamus GTCTGCTTGT (5) 1.8 0.0018 Hypothalamus TTCTTTACAA (3) 1.8 0.0018 E12.5 retina GTCTGCTTGT (5) 11.3 0.0113 E12.5 retina GTTGGAGCAG (4) 9.4 0.0094 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina TAGAAACCAA 1.9 0.0019 E12.5 retina TAGGGAAAAA (7) 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina GTTGGAGCAG (4) 16.4 0.0164 E14.5 retina GTCTGCTTGT (5) 5.5 0.0055 E14.5 retina TAGGGAAAAA (7) 3.6 0.0036 E14.5 retina GCCACCAAGG (4) 1.8 0.0018 E14.5 retina TAGAAACCAA 1.8 0.0018 E16.5 retina GTTGGAGCAG (4) 5.4 0.0054 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina TAGGGAAAAA (7) 3.6 0.0036 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E16.5 retina GTCTGCTTGT (5) 1.8 0.0018 E16.5 retina TAGAAACCAA 1.8 0.0018 E16.5 retina TATAAATATT (8) 1.8 0.0018 E18.5 retina GTCTGCTTGT (5) 18.2 0.0182 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina GTTGGAGCAG (4) 9.1 0.0091 E18.5 retina TTCTTTACAA (3) 5.5 0.0055 E18.5 retina CCTTGCAAAA (5) 1.8 0.0018 E18.5 retina TAGAAACCAA 1.8 0.0018 P0.5 retina GTCTGCTTGT (5) 11.8 0.0118 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina CCTTGCAAAA (5) 3.9 0.0039 P0.5 retina GTTGGAGCAG (4) 3.9 0.0039 P0.5 retina ATTACGCCAA (233) 2 0.002 P0.5 retina CACACGCACA (15) 2 0.002 P0.5 retina TAGAAACCAA 2 0.002 P2.5 retina GTTGGAGCAG (4) 14.1 0.0141 P2.5 retina GTCTGCTTGT (5) 10.6 0.0106 P2.5 retina TAGAAACCAA 7 0.007 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina CCTTGCAAAA (5) 3.5 0.0035 P4.5 retina GTTGGAGCAG (4) 23.8 0.0238 P4.5 retina GTCTGCTTGT (5) 9.9 0.0099 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina CCTTGCAAAA (5) 2 0.002 P4.5 retina TAGAAACCAA 2 0.002 P4.5 retina TATAAATATT (8) 2 0.002 P6.5 retina GTCTGCTTGT (5) 16.7 0.0167 P6.5 retina GTTGGAGCAG (4) 13.3 0.0133 P6.5 retina CCTTGCAAAA (5) 10 0.01 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina TAGGGAAAAA (7) 1.7 0.0017 P10.5 crx- retina GTCTGCTTGT (5) 9.3 0.0093 P10.5 crx- retina GTTGGAGCAG (4) 5.6 0.0056 P10.5 crx- retina TATAAATATT (8) 1.9 0.0019 P10.5 crx- retina TTCTTTACAA (3) 1.9 0.0019 P10.5 crx+ retina GTCTGCTTGT (5) 23.1 0.0231 P10.5 crx+ retina GTTGGAGCAG (4) 9.6 0.0096 P10.5 crx+ retina CCTTGCAAAA (5) 7.7 0.0077 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina CACACGCACA (15) 1.9 0.0019 Adult retinal GTCTGCTTGT (5) 9.3 0.0093 Adult retinal GTTGGAGCAG (4) 7.4 0.0074 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal CCTTGCAAAA (5) 3.7 0.0037 Adult retinal CACACGCACA (15) 1.9 0.0019 Adult retinal TTCTTTACAA (3) 1.9 0.0019 ONL CACACGCACA (15) 5.7 0.0057 ONL GTCTGCTTGT (5) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL CCTTGCAAAA (5) 1.9 0.0019 ONL GTTGGAGCAG (4) 1.9 0.0019