Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.9394	Nfix	nuclear factor I/X	8	8 38.6 cM	18032
Gene Ontology	DNA binding | DNA replication | intracellular | nucleus | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	NFIX[nuclear factor I/X (CCAAT-binding transcription factor)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 42 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGCAGGACTC 17.9 0.0179 P8 Cb GC GTGGTGGTGG (4) 4.9 0.0049 P8 Cb GC CGCCTCTCTC 3.3 0.0033 P8 Cb GC CGTGGGGAAC 3.3 0.0033 P8 Cb GC CTAAGCGGAC (2) 3.3 0.0033 Cb medulloblastoma CTAAGCGGAC (2) 2.3 0.0023 Cb medulloblastoma GAAATATCCC 2.3 0.0023 Cb medulloblastoma GTGGTGGTGG (4) 2.3 0.0023 P8 GC+1d culture GGCAGGACTC 8 0.008 P8 GC+1d culture CGCCTCTCTC 3.4 0.0034 P8 GC+1d culture CGTGGGGAAC 2.3 0.0023 P8 GC+1d culture CTAAGCGGAC (2) 1.1 0.0011 P8 GC+SHH+1d culture GGCAGGACTC 11.7 0.0117 P8 GC+SHH+1d culture CGCCTCTCTC 2.3 0.0023 P8 GC+SHH+1d culture CTAAGCGGAC (2) 1.2 0.0012 3T3 fibroblasts CGCCTCTCTC 28 0.028 3T3 fibroblasts GGCAGGACTC 28 0.028 3T3 fibroblasts CTAAGCGGAC (2) 3.5 0.0035 E15 cortex GGCAGGACTC 54.4 0.0544 E15 cortex CGCCTCTCTC 4.9 0.0049 P1 cortex GGCAGGACTC 40.9 0.0409 P1 cortex CGCCTCTCTC 4.5 0.0045 P1 cortex CTAAGCGGAC (2) 4.5 0.0045 P1 cortex GAAATATCCC 4.5 0.0045 Hypothalamus CTAAGCGGAC (2) 1.8 0.0018 Hypothalamus GGCAGGACTC 1.8 0.0018 Hypothalamus GTGGTGGTGG (4) 1.8 0.0018 E12.5 retina GTGGTGGTGG (4) 1.9 0.0019 E16.5 retina GTGGTGGTGG (4) 1.8 0.0018 E18.5 retina CGCCTCTCTC 1.8 0.0018 P0.5 retina GGCAGGACTC 3.9 0.0039 P2.5 retina GGCAGGACTC 3.5 0.0035 P2.5 retina CTAAGCGGAC (2) 1.8 0.0018 P4.5 retina CGCCTCTCTC 4 0.004 P4.5 retina GAAATATCCC 2 0.002 P4.5 retina GGCAGGACTC 2 0.002 P6.5 retina GTGGTGGTGG (4) 1.7 0.0017 P10.5 crx- retina GTGGTGGTGG (4) 3.7 0.0037 P10.5 crx+ retina GGCAGGACTC 1.9 0.0019 P10.5 crx+ retina GTGGTGGTGG (4) 1.9 0.0019 Adult retinal GTGGTGGTGG (4) 1.9 0.0019 ONL GTGGTGGTGG (4) 3.8 0.0038