Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.9537
Lcn2
lipocalin 2
2
2 27.0 cM
16819
Gene Ontology
binding
|
extracellular space
|
transport
|
transporter activity
Human Homolog
LCN2[lipocalin 2 (oncogene 24p3)]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 105 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GTGGCTGGTG (
10
)
22.8
0.0228
P8 Cb GC
CCCCACAAAA (
6
)
3.3
0.0033
P8 Cb GC
TATTTATTCA
(
5
)
3.3
0.0033
P8 Cb GC
GCGAACTGGT
(
2
)
1.6
0.0016
Cb medulloblastoma
CCCCACAAAA (
6
)
6.9
0.0069
Cb medulloblastoma
GTGGCTGGTG (
10
)
6.9
0.0069
P8 GC+1d culture
CCCCCAAAAA
(
6
)
46.8
0.0468
P8 GC+1d culture
GTGGCTGGTG (
10
)
14.8
0.0148
P8 GC+1d culture
TATTTATTCA
(
5
)
6.8
0.0068
P8 GC+1d culture
CCCCCACTTC (
7
)
4.6
0.0046
P8 GC+1d culture
CCCCCACAAA
(
3
)
3.4
0.0034
P8 GC+1d culture
CCCCAAAAAA
(
2
)
2.3
0.0023
P8 GC+1d culture
CCCCCACTTA
2.3
0.0023
P8 GC+1d culture
GGTCCTTTTG
(
4
)
2.3
0.0023
P8 GC+1d culture
TCACCTCCAT
2.3
0.0023
P8 GC+1d culture
CCCCACAAAA (
6
)
1.1
0.0011
P8 GC+1d culture
GCGAACTGGT
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
CCCCCAAAAA
(
6
)
31.6
0.0316
P8 GC+SHH+1d culture
GTGGCTGGTG (
10
)
17.6
0.0176
P8 GC+SHH+1d culture
TATTTATTCA
(
5
)
8.2
0.0082
P8 GC+SHH+1d culture
CCCCCACAAA
(
3
)
7
0.007
P8 GC+SHH+1d culture
CCCAAAAAAA (
19
)
3.5
0.0035
P8 GC+SHH+1d culture
CCCCACAAAA (
6
)
3.5
0.0035
P8 GC+SHH+1d culture
CCCCCACTTC (
7
)
3.5
0.0035
P8 GC+SHH+1d culture
GGTCCTTTTG
(
4
)
3.5
0.0035
P8 GC+SHH+1d culture
CCCCAAAAAA
(
2
)
2.3
0.0023
P8 GC+SHH+1d culture
CCCCCACTTA
2.3
0.0023
3T3 fibroblasts
GTGGCTGGTG (
10
)
21
0.021
3T3 fibroblasts
GTCATAGCTG (
590
)
10.5
0.0105
3T3 fibroblasts
GCGAACTGGT
(
2
)
3.5
0.0035
E15 cortex
GTGGCTGGTG (
10
)
14.8
0.0148
E15 cortex
CCCAAAAAAA (
19
)
4.9
0.0049
E15 cortex
GTCATAGCTG (
590
)
4.9
0.0049
P1 cortex
GTGGCTGGTG (
10
)
9.1
0.0091
Hypothalamus
GTGGCTGGTG (
10
)
12.7
0.0127
Hypothalamus
TATTTATTCA
(
5
)
3.6
0.0036
Hypothalamus
TCACCTCCAT
3.6
0.0036
Hypothalamus
CCCCACAAAA (
6
)
1.8
0.0018
Hypothalamus
CCCCCAAAAA
(
6
)
1.8
0.0018
E12.5 retina
GTGGCTGGTG (
10
)
22.5
0.0225
E12.5 retina
CCCCACAAAA (
6
)
1.9
0.0019
E12.5 retina
GGTTCCTTTT (
7
)
1.9
0.0019
E12.5 retina
TCCCCCAAAA (
4
)
1.9
0.0019
E14.5 retina
GTGGCTGGTG (
10
)
21.9
0.0219
E14.5 retina
CCCCACAAAA (
6
)
3.6
0.0036
E14.5 retina
CCCCAAAAAA
(
2
)
1.8
0.0018
E14.5 retina
CCCCCACTTC (
7
)
1.8
0.0018
E14.5 retina
TATTTATTCA
(
5
)
1.8
0.0018
E16.5 retina
GTGGCTGGTG (
10
)
23.5
0.0235
E16.5 retina
CCCCACAAAA (
6
)
5.4
0.0054
E16.5 retina
CCCAAAAAAA (
19
)
1.8
0.0018
E16.5 retina
TATTTATTCA
(
5
)
1.8
0.0018
E16.5 retina
TCCCCCAAAA (
4
)
1.8
0.0018
E18.5 retina
GTGGCTGGTG (
10
)
21.8
0.0218
E18.5 retina
GGTTCCTTTT (
7
)
5.5
0.0055
E18.5 retina
CCCAAAAAAA (
19
)
3.6
0.0036
E18.5 retina
CCCCACAAAA (
6
)
3.6
0.0036
E18.5 retina
GGTCCTTTTG
(
4
)
1.8
0.0018
E18.5 retina
TATTTATTCA
(
5
)
1.8
0.0018
E18.5 retina
TCCCCCAAAA (
4
)
1.8
0.0018
P0.5 retina
GTGGCTGGTG (
10
)
17.7
0.0177
P0.5 retina
GTCATAGCTG (
590
)
3.9
0.0039
P0.5 retina
CCCAAAAAAA (
19
)
2
0.002
P2.5 retina
GTGGCTGGTG (
10
)
21.1
0.0211
P2.5 retina
CCCCACAAAA (
6
)
10.6
0.0106
P2.5 retina
GGTCCTTTTG
(
4
)
7
0.007
P2.5 retina
TATTTATTCA
(
5
)
3.5
0.0035
P2.5 retina
CCCAAAAAAA (
19
)
1.8
0.0018
P2.5 retina
GGTTCCTTTT (
7
)
1.8
0.0018
P2.5 retina
GTCATAGCTG (
590
)
1.8
0.0018
P4.5 retina
GTGGCTGGTG (
10
)
21.8
0.0218
P4.5 retina
CCCAAAAAAA (
19
)
2
0.002
P4.5 retina
CCCCACAAAA (
6
)
2
0.002
P4.5 retina
GGTCCTTTTG
(
4
)
2
0.002
P4.5 retina
GTCATAGCTG (
590
)
2
0.002
P4.5 retina
TATTTATTCA
(
5
)
2
0.002
P6.5 retina
GTGGCTGGTG (
10
)
15
0.015
P6.5 retina
CCCCACAAAA (
6
)
8.3
0.0083
P6.5 retina
CCCAAAAAAA (
19
)
3.3
0.0033
P6.5 retina
GTCATAGCTG (
590
)
3.3
0.0033
P6.5 retina
TATTTATTCA
(
5
)
3.3
0.0033
P6.5 retina
TCACCTCCAT
3.3
0.0033
P6.5 retina
TCCCCCAAAA (
4
)
1.7
0.0017
P10.5 crx- retina
GTGGCTGGTG (
10
)
5.6
0.0056
P10.5 crx- retina
TATTTATTCA
(
5
)
3.7
0.0037
P10.5 crx- retina
CCCCACAAAA (
6
)
1.9
0.0019
P10.5 crx- retina
GGTTCCTTTT (
7
)
1.9
0.0019
P10.5 crx+ retina
GTGGCTGGTG (
10
)
13.5
0.0135
P10.5 crx+ retina
CCCCACAAAA (
6
)
5.8
0.0058
P10.5 crx+ retina
CCCCCAAAAA
(
6
)
1.9
0.0019
P10.5 crx+ retina
TATTTATTCA
(
5
)
1.9
0.0019
Adult retinal
GTGGCTGGTG (
10
)
11.1
0.0111
Adult retinal
CCCCACAAAA (
6
)
9.3
0.0093
Adult retinal
TCACCTCCAT
3.7
0.0037
Adult retinal
CCCAAAAAAA (
19
)
1.9
0.0019
Adult retinal
GTCATAGCTG (
590
)
1.9
0.0019
Adult retinal
TCCCCCAAAA (
4
)
1.9
0.0019
ONL
GTGGCTGGTG (
10
)
9.6
0.0096
ONL
CCCCACAAAA (
6
)
5.7
0.0057
ONL
GTCATAGCTG (
590
)
5.7
0.0057
ONL
TATTTATTCA
(
5
)
3.8
0.0038
ONL
CCCAAAAAAA (
19
)
1.9
0.0019
ONL
GGTCCTTTTG
(
4
)
1.9
0.0019
ONL
TCACCTCCAT
1.9
0.0019
ONL
TCCCCCAAAA (
4
)
1.9
0.0019
