Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.123366	Trap1	TNF receptor-associated protein 1	16	16 1.8 cM	68015
Gene Ontology	ATP binding | extracellular space | mitochondrion | protein folding
Human Homolog	TRAP1[TNF receptor-associated protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 50 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCAGGGTGGG (6) 37.5 0.0375 P8 Cb GC GTCGGCCGCC (25) 3.3 0.0033 P8 Cb GC AGTTCCAGGC (6) 1.6 0.0016 Cb medulloblastoma GCAGGGTGGG (6) 23.1 0.0231 Cb medulloblastoma GGTTCTGGGA (5) 2.3 0.0023 P8 GC+1d culture GCAGGGTGGG (6) 45.7 0.0457 P8 GC+1d culture GTCGGCCGCC (25) 1.1 0.0011 P8 GC+SHH+1d culture GCAGGGTGGG (6) 52.7 0.0527 P8 GC+SHH+1d culture GTCGGCCGCC (25) 4.7 0.0047 3T3 fibroblasts GCAGGGTGGG (6) 10.5 0.0105 3T3 fibroblasts GGTTCTGGGA (5) 3.5 0.0035 3T3 fibroblasts GTCGGCCGCC (25) 3.5 0.0035 E15 cortex GCAGGGTGGG (6) 34.6 0.0346 E15 cortex AGTTCCAGGC (6) 4.9 0.0049 E15 cortex GGGAAAGGGG (17) 4.9 0.0049 P1 cortex GCAGGGTGGG (6) 22.7 0.0227 Hypothalamus GCAGGGTGGG (6) 7.2 0.0072 Hypothalamus AGTTCCAGGC (6) 1.8 0.0018 Hypothalamus GTCGGCCGCC (25) 1.8 0.0018 E12.5 retina GCAGGGTGGG (6) 37.5 0.0375 E12.5 retina GGGAAAGGGG (17) 3.8 0.0038 E12.5 retina GTCGGCCGCC (25) 1.9 0.0019 E14.5 retina GCAGGGTGGG (6) 43.7 0.0437 E14.5 retina GTCGGCCGCC (25) 3.6 0.0036 E14.5 retina AGTTCCAGGC (6) 1.8 0.0018 E14.5 retina GGTTCTGGGA (5) 1.8 0.0018 E14.5 retina TTTGATGTGA 1.8 0.0018 E16.5 retina GCAGGGTGGG (6) 32.6 0.0326 E16.5 retina GGGAAAGGGG (17) 1.8 0.0018 E18.5 retina GCAGGGTGGG (6) 49.1 0.0491 P0.5 retina GCAGGGTGGG (6) 47.1 0.0471 P0.5 retina GTCGGCCGCC (25) 5.9 0.0059 P0.5 retina GGTTCTGGGA (5) 2 0.002 P2.5 retina GCAGGGTGGG (6) 88 0.088 P2.5 retina GTCGGCCGCC (25) 3.5 0.0035 P2.5 retina AGTTCCAGGC (6) 1.8 0.0018 P4.5 retina GCAGGGTGGG (6) 71.3 0.0713 P4.5 retina GTCGGCCGCC (25) 2 0.002 P6.5 retina GCAGGGTGGG (6) 41.7 0.0417 P6.5 retina GGTTCTGGGA (5) 1.7 0.0017 P10.5 crx- retina GCAGGGTGGG (6) 3.7 0.0037 P10.5 crx- retina GTCGGCCGCC (25) 3.7 0.0037 P10.5 crx+ retina GCAGGGTGGG (6) 38.4 0.0384 P10.5 crx+ retina GTCGGCCGCC (25) 3.8 0.0038 P10.5 crx+ retina TTTGATGTGA 1.9 0.0019 Adult retinal GCAGGGTGGG (6) 7.4 0.0074 Adult retinal GGTTCTGGGA (5) 1.9 0.0019 Adult retinal GTCGGCCGCC (25) 1.9 0.0019 ONL AGTTCCAGGC (6) 1.9 0.0019 ONL GCAGGGTGGG (6) 1.9 0.0019