Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.123831	Tcrb-V8.2	T-cell receptor beta, variable 8.2	6	6 20.5 cM	21607
Mm.123831	Tcrb-V8.3	T-cell receptor beta, variable 8.3	6	6 20.5 cM	21608
Gene Ontology	cellular defense response | integral to plasma membrane
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 109 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAAAAAAAAA (204) 45.7 0.0457 P8 Cb GC GTCAAAAAAA (15) 4.9 0.0049 P8 Cb GC CACTCCTGGA (4) 1.6 0.0016 P8 Cb GC GAGTTAACCC (3) 1.6 0.0016 P8 Cb GC GCCAACAGCA (13) 1.6 0.0016 P8 Cb GC GGGTGAGGGT (8) 1.6 0.0016 Cb medulloblastoma GAAAAAAAAA (204) 173.4 0.1734 Cb medulloblastoma GTCAAAAAAA (15) 6.9 0.0069 Cb medulloblastoma GGGTGAGGGT (8) 4.6 0.0046 Cb medulloblastoma CATAAATGTG (8) 2.3 0.0023 Cb medulloblastoma GCCCCCAGGC (6) 2.3 0.0023 P8 GC+1d culture GAAAAAAAAA (204) 41.1 0.0411 P8 GC+1d culture GGGTGAGGGT (8) 14.8 0.0148 P8 GC+1d culture GTCAAAAAAA (15) 12.6 0.0126 P8 GC+1d culture ACTGAAAAAC (5) 2.3 0.0023 P8 GC+1d culture AGGTGAACCA (6) 1.1 0.0011 P8 GC+1d culture GAGTTTAAAT (4) 1.1 0.0011 P8 GC+1d culture GCCATCACAC (4) 1.1 0.0011 P8 GC+1d culture TCTCTCTACA (5) 1.1 0.0011 P8 GC+SHH+1d culture GAAAAAAAAA (204) 77.3 0.0773 P8 GC+SHH+1d culture GTCAAAAAAA (15) 15.2 0.0152 P8 GC+SHH+1d culture GGGTGAGGGT (8) 8.2 0.0082 P8 GC+SHH+1d culture GCCATCACAC (4) 2.3 0.0023 P8 GC+SHH+1d culture GAGGAAGAAG (9) 1.2 0.0012 3T3 fibroblasts GCCAACAGCA (13) 21 0.021 3T3 fibroblasts CACTCCTGGA (4) 7 0.007 3T3 fibroblasts GCCATCAGGA (8) 7 0.007 3T3 fibroblasts AGGTGAACCA (6) 3.5 0.0035 3T3 fibroblasts GGGTGAGGGT (8) 3.5 0.0035 3T3 fibroblasts GTGGTGATGG (3) 3.5 0.0035 E15 cortex GAAAAAAAAA (204) 54.4 0.0544 E15 cortex GTCAAAAAAA (15) 24.7 0.0247 E15 cortex GAGGAAGAAG (9) 4.9 0.0049 E15 cortex GCCCCCAGGC (6) 4.9 0.0049 P1 cortex GAAAAAAAAA (204) 45.5 0.0455 P1 cortex GTCAAAAAAA (15) 22.7 0.0227 P1 cortex GGGTGAGGGT (8) 9.1 0.0091 P1 cortex AGGTGAACCA (6) 4.5 0.0045 P1 cortex TGGGCACATA (5) 4.5 0.0045 Hypothalamus GAAAAAAAAA (204) 67 0.067 Hypothalamus GGGTGAGGGT (8) 9.1 0.0091 Hypothalamus CAGAAACAGG (3) 5.4 0.0054 Hypothalamus GTCAAAAAAA (15) 5.4 0.0054 E12.5 retina GAAAAAAAAA (204) 46.9 0.0469 E12.5 retina GGGTGAGGGT (8) 9.4 0.0094 E12.5 retina TGGGCACATA (5) 5.6 0.0056 E12.5 retina ACTGAAAAAC (5) 1.9 0.0019 E12.5 retina CAGAAACAGG (3) 1.9 0.0019 E12.5 retina GCCAACAGCA (13) 1.9 0.0019 E12.5 retina GTCAAAAAAA (15) 1.9 0.0019 E12.5 retina TCTCTCTACA (5) 1.9 0.0019 E14.5 retina GAAAAAAAAA (204) 34.6 0.0346 E14.5 retina GTCAAAAAAA (15) 10.9 0.0109 E14.5 retina AGGTGAACCA (6) 1.8 0.0018 E14.5 retina CATAAATGTG (8) 1.8 0.0018 E16.5 retina GAAAAAAAAA (204) 23.5 0.0235 E16.5 retina GTCAAAAAAA (15) 10.9 0.0109 E16.5 retina CAGAAACAGG (3) 3.6 0.0036 E16.5 retina GAGGAAGAAG (9) 1.8 0.0018 E16.5 retina GGGTGAGGGT (8) 1.8 0.0018 E18.5 retina GAAAAAAAAA (204) 65.5 0.0655 E18.5 retina GTCAAAAAAA (15) 30.9 0.0309 E18.5 retina CAGAAACAGG (3) 1.8 0.0018 E18.5 retina GAGTTTAAAT (4) 1.8 0.0018 E18.5 retina GCCATCAGGA (8) 1.8 0.0018 E18.5 retina GGGTGAGGGT (8) 1.8 0.0018 P0.5 retina GAAAAAAAAA (204) 35.3 0.0353 P0.5 retina GGGTGAGGGT (8) 9.8 0.0098 P0.5 retina GTCAAAAAAA (15) 7.9 0.0079 P0.5 retina CAGAAACAGG (3) 2 0.002 P2.5 retina GAAAAAAAAA (204) 86.2 0.0862 P2.5 retina GTCAAAAAAA (15) 10.6 0.0106 P2.5 retina GGGTGAGGGT (8) 8.8 0.0088 P2.5 retina CAGAAACAGG (3) 3.5 0.0035 P2.5 retina AGGTGAACCA (6) 1.8 0.0018 P2.5 retina GAGTTAACCC (3) 1.8 0.0018 P2.5 retina GAGTTTAAAT (4) 1.8 0.0018 P2.5 retina GTGGTGATGG (3) 1.8 0.0018 P2.5 retina TCTCTCTACA (5) 1.8 0.0018 P4.5 retina GAAAAAAAAA (204) 51.5 0.0515 P4.5 retina GGGTGAGGGT (8) 5.9 0.0059 P4.5 retina ACTGAAAAAC (5) 2 0.002 P4.5 retina CATAAATGTG (8) 2 0.002 P4.5 retina GTCAAAAAAA (15) 2 0.002 P6.5 retina GAAAAAAAAA (204) 40 0.04 P6.5 retina GGGTGAGGGT (8) 20 0.02 P6.5 retina GTCAAAAAAA (15) 10 0.01 P6.5 retina CAGAAACAGG (3) 5 0.005 P6.5 retina GCCAACAGCA (13) 1.7 0.0017 P6.5 retina GTGGTGATGG (3) 1.7 0.0017 P6.5 retina TCTCTCTACA (5) 1.7 0.0017 P10.5 crx- retina GAAAAAAAAA (204) 16.7 0.0167 P10.5 crx- retina GGGTGAGGGT (8) 14.9 0.0149 P10.5 crx- retina ACTGAAAAAC (5) 3.7 0.0037 P10.5 crx- retina GTCAAAAAAA (15) 3.7 0.0037 P10.5 crx- retina GCCCCCAGGC (6) 1.9 0.0019 P10.5 crx+ retina GAAAAAAAAA (204) 42.3 0.0423 P10.5 crx+ retina GTCAAAAAAA (15) 5.8 0.0058 P10.5 crx+ retina GAGTTAACCC (3) 1.9 0.0019 P10.5 crx+ retina GCCAACAGCA (13) 1.9 0.0019 P10.5 crx+ retina GGGTGAGGGT (8) 1.9 0.0019 Adult retinal GAAAAAAAAA (204) 16.7 0.0167 Adult retinal GTCAAAAAAA (15) 7.4 0.0074 Adult retinal GGGTGAGGGT (8) 3.7 0.0037 Adult retinal AGGTGAACCA (6) 1.9 0.0019 Adult retinal GCCATCACAC (4) 1.9 0.0019 ONL GAAAAAAAAA (204) 24.9 0.0249 ONL ACTGAAAAAC (5) 1.9 0.0019 ONL GTCAAAAAAA (15) 1.9 0.0019