Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.127405
1700129L13Rik
RIKEN cDNA 1700129L13 gene
10
67933
Human Homolog
HCFC2[host cell factor C2]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 61 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CACACACACA (
106
)
11.4
0.0114
P8 Cb GC
TACAGTGACT
(
5
)
3.3
0.0033
P8 Cb GC
TTAAGTCACC
(
2
)
1.6
0.0016
Cb medulloblastoma
CACACACACA (
106
)
32.4
0.0324
Cb medulloblastoma
GGCCCACATC
(
4
)
2.3
0.0023
Cb medulloblastoma
GTTCTAATAC
2.3
0.0023
Cb medulloblastoma
TACAGTGACT
(
5
)
2.3
0.0023
Cb medulloblastoma
TTAAGTCACC
(
2
)
2.3
0.0023
P8 GC+1d culture
CACACACACA (
106
)
6.8
0.0068
P8 GC+1d culture
GGCCCACATC
(
4
)
2.3
0.0023
P8 GC+1d culture
GATTTGTCTG
(
2
)
1.1
0.0011
P8 GC+1d culture
GTTCTAATAC
1.1
0.0011
P8 GC+SHH+1d culture
CACACACACA (
106
)
9.4
0.0094
P8 GC+SHH+1d culture
TACAGTGACT
(
5
)
2.3
0.0023
P8 GC+SHH+1d culture
GGCCCACATC
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TTAAGTCACC
(
2
)
1.2
0.0012
3T3 fibroblasts
CACACACACA (
106
)
17.5
0.0175
3T3 fibroblasts
TACAGTGACT
(
5
)
10.5
0.0105
3T3 fibroblasts
TTAAGTCACC
(
2
)
3.5
0.0035
E15 cortex
CACACACACA (
106
)
4.9
0.0049
E15 cortex
GGCCCACATC
(
4
)
4.9
0.0049
P1 cortex
CACACACACA (
106
)
27.3
0.0273
P1 cortex
GGCCCACATC
(
4
)
4.5
0.0045
P1 cortex
TACAGTGACT
(
5
)
4.5
0.0045
P1 cortex
TTAAGTCACC
(
2
)
4.5
0.0045
Hypothalamus
CACACACACA (
106
)
96
0.096
Hypothalamus
GGCCCACATC
(
4
)
10.9
0.0109
Hypothalamus
TTAAGTCACC
(
2
)
5.4
0.0054
Hypothalamus
TACAGTGACT
(
5
)
3.6
0.0036
E12.5 retina
CACACACACA (
106
)
3.8
0.0038
E12.5 retina
GGCCCACATC
(
4
)
1.9
0.0019
E14.5 retina
CACACACACA (
106
)
18.2
0.0182
E14.5 retina
TTAAGTCACC
(
2
)
1.8
0.0018
E16.5 retina
CACACACACA (
106
)
12.7
0.0127
E16.5 retina
GGCCCACATC
(
4
)
3.6
0.0036
E18.5 retina
CACACACACA (
106
)
5.5
0.0055
E18.5 retina
GGCCCACATC
(
4
)
1.8
0.0018
E18.5 retina
GTTCTAATAC
1.8
0.0018
E18.5 retina
TTAAGTCACC
(
2
)
1.8
0.0018
P0.5 retina
CACACACACA (
106
)
7.9
0.0079
P0.5 retina
GATTTGTCTG
(
2
)
2
0.002
P2.5 retina
CACACACACA (
106
)
21.1
0.0211
P2.5 retina
TTAAGTCACC
(
2
)
1.8
0.0018
P4.5 retina
CACACACACA (
106
)
7.9
0.0079
P4.5 retina
GATTTGTCTG
(
2
)
2
0.002
P4.5 retina
GTTCTAATAC
2
0.002
P4.5 retina
TTAAGTCACC
(
2
)
2
0.002
P6.5 retina
CACACACACA (
106
)
8.3
0.0083
P6.5 retina
GGCCCACATC
(
4
)
3.3
0.0033
P6.5 retina
TACAGTGACT
(
5
)
1.7
0.0017
P10.5 crx- retina
GATTTGTCTG
(
2
)
7.4
0.0074
P10.5 crx- retina
CACACACACA (
106
)
5.6
0.0056
P10.5 crx- retina
GGCCCACATC
(
4
)
1.9
0.0019
P10.5 crx+ retina
CACACACACA (
106
)
7.7
0.0077
P10.5 crx+ retina
GTTCTAATAC
3.8
0.0038
Adult retinal
CACACACACA (
106
)
16.7
0.0167
Adult retinal
GGCCCACATC
(
4
)
5.6
0.0056
Adult retinal
GATTTGTCTG
(
2
)
3.7
0.0037
Adult retinal
TACAGTGACT
(
5
)
1.9
0.0019
ONL
CACACACACA (
106
)
21.1
0.0211
ONL
GATTTGTCTG
(
2
)
5.7
0.0057
