Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.142822	Ewsr1	Ewing sarcoma breakpoint region 1	11		14030
Gene Ontology	calmodulin binding | DNA binding | nucleus | regulation of transcription, DNA-dependent | RNA binding
Human Homolog	EWSR1[Ewing sarcoma breakpoint region 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 140 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTCACAAGGG 22.8 0.0228 P8 Cb GC GTTGTGATTT (2) 21.2 0.0212 P8 Cb GC GTCTACAGAG (15) 4.9 0.0049 P8 Cb GC TATTTTTATA (12) 4.9 0.0049 P8 Cb GC GATGAAGGAC (3) 3.3 0.0033 P8 Cb GC CCACCTCGTG (5) 1.6 0.0016 P8 Cb GC GACCGTGGTG (3) 1.6 0.0016 P8 Cb GC GAGGAGGAGG (35) 1.6 0.0016 P8 Cb GC GGAAGCCCCT (4) 1.6 0.0016 Cb medulloblastoma CTCACAAGGG 9.2 0.0092 Cb medulloblastoma GTTGTGATTT (2) 4.6 0.0046 Cb medulloblastoma CATCCATTGT (2) 2.3 0.0023 Cb medulloblastoma GGTGTCTATG (3) 2.3 0.0023 Cb medulloblastoma GTCTACAGAG (15) 2.3 0.0023 Cb medulloblastoma TTCATAAAGG (3) 2.3 0.0023 P8 GC+1d culture GTTGTGATTT (2) 14.8 0.0148 P8 GC+1d culture GACCGTGGTG (3) 8 0.008 P8 GC+1d culture CTCACAAGGG 6.8 0.0068 P8 GC+1d culture GTCTACAGAG (15) 3.4 0.0034 P8 GC+1d culture TATTTTTATA (12) 2.3 0.0023 P8 GC+1d culture GGTGTCTATG (3) 1.1 0.0011 P8 GC+1d culture TCCTCCATAT (6) 1.1 0.0011 P8 GC+SHH+1d culture GTTGTGATTT (2) 23.4 0.0234 P8 GC+SHH+1d culture CTCACAAGGG 9.4 0.0094 P8 GC+SHH+1d culture GACCGTGGTG (3) 7 0.007 P8 GC+SHH+1d culture GTCTACAGAG (15) 2.3 0.0023 P8 GC+SHH+1d culture GAGGAGGAGG (35) 1.2 0.0012 P8 GC+SHH+1d culture GGTGTCTATG (3) 1.2 0.0012 P8 GC+SHH+1d culture TATTTTTATA (12) 1.2 0.0012 3T3 fibroblasts CTCACAAGGG 28 0.028 3T3 fibroblasts GACCGTGGTG (3) 24.5 0.0245 3T3 fibroblasts CCACCTCGTG (5) 3.5 0.0035 3T3 fibroblasts GAGGAGGAGG (35) 3.5 0.0035 3T3 fibroblasts GTCTACAGAG (15) 3.5 0.0035 E15 cortex GTTGTGATTT (2) 19.8 0.0198 E15 cortex CTCACAAGGG 14.8 0.0148 E15 cortex GACCGTGGTG (3) 9.9 0.0099 E15 cortex GAGGAGGAGG (35) 4.9 0.0049 E15 cortex GTCTACAGAG (15) 4.9 0.0049 P1 cortex CTCACAAGGG 40.9 0.0409 P1 cortex GTCTACAGAG (15) 13.6 0.0136 P1 cortex TCCTCCATAT (6) 9.1 0.0091 P1 cortex CCACCTCGTG (5) 4.5 0.0045 P1 cortex GACCGTGGTG (3) 4.5 0.0045 P1 cortex GAGGAGGAGG (35) 4.5 0.0045 P1 cortex GGAAGCCCCT (4) 4.5 0.0045 P1 cortex GTTGTGATTT (2) 4.5 0.0045 Hypothalamus GAGGAGGAGG (35) 7.2 0.0072 Hypothalamus CTCACAAGGG 5.4 0.0054 Hypothalamus GGTGTCTATG (3) 5.4 0.0054 Hypothalamus GTTGTGATTT (2) 5.4 0.0054 Hypothalamus GACCGTGGTG (3) 1.8 0.0018 Hypothalamus GTCTACAGAG (15) 1.8 0.0018 Hypothalamus TATTTTTATA (12) 1.8 0.0018 Hypothalamus TCCTCCATAT (6) 1.8 0.0018 E12.5 retina CTCACAAGGG 31.9 0.0319 E12.5 retina GTTGTGATTT (2) 20.7 0.0207 E12.5 retina GACCGTGGTG (3) 7.5 0.0075 E12.5 retina GAGGAGGAGG (35) 1.9 0.0019 E12.5 retina GATGAAGGAC (3) 1.9 0.0019 E12.5 retina GGAAGCCCCT (4) 1.9 0.0019 E14.5 retina GTTGTGATTT (2) 54.7 0.0547 E14.5 retina CTCACAAGGG 16.4 0.0164 E14.5 retina GTCTACAGAG (15) 7.3 0.0073 E14.5 retina GACCGTGGTG (3) 3.6 0.0036 E14.5 retina CCACCTCGTG (5) 1.8 0.0018 E14.5 retina TATTTTTATA (12) 1.8 0.0018 E16.5 retina CTCACAAGGG 45.3 0.0453 E16.5 retina GTTGTGATTT (2) 30.8 0.0308 E16.5 retina GGAAGCCCCT (4) 3.6 0.0036 E16.5 retina CCACCAGGGC 1.8 0.0018 E16.5 retina GACCGTGGTG (3) 1.8 0.0018 E16.5 retina GTCTACAGAG (15) 1.8 0.0018 E16.5 retina TATTTTTATA (12) 1.8 0.0018 E18.5 retina GTTGTGATTT (2) 40 0.04 E18.5 retina CTCACAAGGG 14.6 0.0146 E18.5 retina GGAAGCCCCT (4) 5.5 0.0055 E18.5 retina GTCTACAGAG (15) 5.5 0.0055 E18.5 retina GACCGTGGTG (3) 3.6 0.0036 E18.5 retina TATTTTTATA (12) 3.6 0.0036 E18.5 retina CATCCATTGT (2) 1.8 0.0018 E18.5 retina GGTGGTTATG 1.8 0.0018 E18.5 retina GGTGTCTATG (3) 1.8 0.0018 P0.5 retina GTTGTGATTT (2) 21.6 0.0216 P0.5 retina CTCACAAGGG 19.6 0.0196 P0.5 retina GACCGTGGTG (3) 19.6 0.0196 P0.5 retina GTCTACAGAG (15) 3.9 0.0039 P0.5 retina CATCCATTGT (2) 2 0.002 P0.5 retina CCACCAGGGC 2 0.002 P0.5 retina TTCATAAAGG (3) 2 0.002 P2.5 retina GTTGTGATTT (2) 22.9 0.0229 P2.5 retina CTCACAAGGG 19.4 0.0194 P2.5 retina GACCGTGGTG (3) 8.8 0.0088 P2.5 retina TATTTTTATA (12) 3.5 0.0035 P2.5 retina GAGGAGGAGG (35) 1.8 0.0018 P2.5 retina GGTGTCTATG (3) 1.8 0.0018 P4.5 retina GTTGTGATTT (2) 51.5 0.0515 P4.5 retina CTCACAAGGG 23.8 0.0238 P4.5 retina GTCTACAGAG (15) 7.9 0.0079 P4.5 retina GACCGTGGTG (3) 4 0.004 P4.5 retina TCCTCCATAT (6) 4 0.004 P4.5 retina GAGGAGGAGG (35) 2 0.002 P4.5 retina GGAAGCCCCT (4) 2 0.002 P4.5 retina GGTGTCTATG (3) 2 0.002 P4.5 retina TATTTTTATA (12) 2 0.002 P6.5 retina CTCACAAGGG 40 0.04 P6.5 retina GTTGTGATTT (2) 31.7 0.0317 P6.5 retina GTCTACAGAG (15) 5 0.005 P6.5 retina TTCATAAAGG (3) 3.3 0.0033 P6.5 retina GACCGTGGTG (3) 1.7 0.0017 P6.5 retina TATTTTTATA (12) 1.7 0.0017 P10.5 crx- retina GTTGTGATTT (2) 50.2 0.0502 P10.5 crx- retina CTCACAAGGG 48.3 0.0483 P10.5 crx- retina GACCGTGGTG (3) 5.6 0.0056 P10.5 crx- retina GTCTACAGAG (15) 3.7 0.0037 P10.5 crx- retina CCACCAGGGC 1.9 0.0019 P10.5 crx- retina GAGGAGGAGG (35) 1.9 0.0019 P10.5 crx- retina GGAAGCCCCT (4) 1.9 0.0019 P10.5 crx+ retina CTCACAAGGG 23.1 0.0231 P10.5 crx+ retina GTTGTGATTT (2) 13.5 0.0135 P10.5 crx+ retina GTCTACAGAG (15) 7.7 0.0077 P10.5 crx+ retina GACCGTGGTG (3) 3.8 0.0038 P10.5 crx+ retina GGTGGTTATG 1.9 0.0019 Adult retinal CTCACAAGGG 16.7 0.0167 Adult retinal GACCGTGGTG (3) 11.1 0.0111 Adult retinal GAGGAGGAGG (35) 3.7 0.0037 Adult retinal GGTGGTTATG 3.7 0.0037 Adult retinal GTCTACAGAG (15) 3.7 0.0037 Adult retinal GTTGTGATTT (2) 3.7 0.0037 Adult retinal TCCTCCATAT (6) 3.7 0.0037 Adult retinal GGAAGCCCCT (4) 1.9 0.0019 Adult retinal TATTTTTATA (12) 1.9 0.0019 ONL GTCTACAGAG (15) 11.5 0.0115 ONL CTCACAAGGG 9.6 0.0096 ONL GTTGTGATTT (2) 9.6 0.0096 ONL GACCGTGGTG (3) 5.7 0.0057 ONL CCACCAGGGC 1.9 0.0019 ONL GAGGAGGAGG (35) 1.9 0.0019 ONL GGTGGTTATG 1.9 0.0019 ONL TCCTCCATAT (6) 1.9 0.0019