Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.147091	C230011H18Rik	RIKEN cDNA C230011H18 gene	2		399590
Mm.147091	D230046B21Rik	RIKEN cDNA D230046B21 gene	2		320325
Mm.147091	6430543K15Rik	RIKEN cDNA 6430543K15 gene	2		320349
Mm.147091	B230345P09Rik	RIKEN cDNA B230345P09 gene	2		319536
Mm.147091	Cugbp2	CUG triplet repeat,RNA binding protein 2	2		14007
Gene Ontology	mRNA splice site selection | nucleus | pre-mRNA splicing factor activity
Human Homolog	CUGBP2[CUG triplet repeat, RNA binding protein 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 191 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC ACATTTAAAA (10) 24.5 0.0245 P8 Cb GC TTGGTGCTTC (8) 21.2 0.0212 P8 Cb GC GAATTTTATT (11) 11.4 0.0114 P8 Cb GC CAAGACTGAA (9) 9.8 0.0098 P8 Cb GC TGAGAGAAAA (8) 9.8 0.0098 P8 Cb GC CCTACAGTCC (6) 4.9 0.0049 P8 Cb GC GTATTTTATT (6) 4.9 0.0049 P8 Cb GC AAACCCTTAT (5) 3.3 0.0033 P8 Cb GC ACATTTATTG (5) 3.3 0.0033 P8 Cb GC ATTGGTGTTA (5) 1.6 0.0016 P8 Cb GC CGTCTGAGAA (6) 1.6 0.0016 P8 Cb GC GATTGTCTAA (6) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma ACATTTAAAA (10) 6.9 0.0069 Cb medulloblastoma GAATTTTATT (11) 6.9 0.0069 Cb medulloblastoma TGAGAGAAAA (8) 6.9 0.0069 Cb medulloblastoma CTTTTCCCTC (6) 2.3 0.0023 Cb medulloblastoma GTATTTTATT (6) 2.3 0.0023 Cb medulloblastoma TTGGTGCTTC (8) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture TTGGTGCTTC (8) 11.4 0.0114 P8 GC+1d culture ACATTTAAAA (10) 10.3 0.0103 P8 GC+1d culture TGAGAGAAAA (8) 9.1 0.0091 P8 GC+1d culture TTTCATTGTT (6) 8 0.008 P8 GC+1d culture ACATTTATTG (5) 5.7 0.0057 P8 GC+1d culture AAACCCTTAT (5) 4.6 0.0046 P8 GC+1d culture CAAGACTGAA (9) 2.3 0.0023 P8 GC+1d culture GTATTTTATT (6) 2.3 0.0023 P8 GC+1d culture CCTACAGTCC (6) 1.1 0.0011 P8 GC+1d culture GAATTTTATT (11) 1.1 0.0011 P8 GC+1d culture GATTGTCTAA (6) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture TGAGAGAAAA (8) 16.4 0.0164 P8 GC+SHH+1d culture ACATTTAAAA (10) 10.5 0.0105 P8 GC+SHH+1d culture TTGGTGCTTC (8) 9.4 0.0094 P8 GC+SHH+1d culture GTATTTTATT (6) 8.2 0.0082 P8 GC+SHH+1d culture GAATTTTATT (11) 4.7 0.0047 P8 GC+SHH+1d culture GATTGTCTAA (6) 4.7 0.0047 P8 GC+SHH+1d culture TTTCATTGTT (6) 4.7 0.0047 P8 GC+SHH+1d culture AAACCCTTAT (5) 2.3 0.0023 P8 GC+SHH+1d culture ACATTTATTG (5) 2.3 0.0023 P8 GC+SHH+1d culture CCTACAGTCC (6) 2.3 0.0023 P8 GC+SHH+1d culture GAGGGTGTGT (5) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex TGAGAGAAAA (8) 19.8 0.0198 E15 cortex GAATTTTATT (11) 14.8 0.0148 E15 cortex CCTACAGTCC (6) 9.9 0.0099 E15 cortex AACTTTTTTT (8) 4.9 0.0049 E15 cortex ACATTTAAAA (10) 4.9 0.0049 E15 cortex TTGGTGCTTC (8) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex TTTCATTGTT (6) 9.1 0.0091 P1 cortex AAACCCTTAT (5) 4.5 0.0045 P1 cortex AACTTTTTTT (8) 4.5 0.0045 P1 cortex ATTGGTGTTA (5) 4.5 0.0045 P1 cortex CGTCTGAGAA (6) 4.5 0.0045 P1 cortex GATTGTCTAA (6) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus TGAGAGAAAA (8) 5.4 0.0054 Hypothalamus TTGGTGCTTC (8) 5.4 0.0054 Hypothalamus ACATTTAAAA (10) 3.6 0.0036 Hypothalamus GAATTTTATT (11) 3.6 0.0036 Hypothalamus AACTTTTTTT (8) 1.8 0.0018 Hypothalamus ACATTTATTG (5) 1.8 0.0018 Hypothalamus CAAGACTGAA (9) 1.8 0.0018 Hypothalamus CCTACAGTCC (6) 1.8 0.0018 Hypothalamus CTTTTCCCTC (6) 1.8 0.0018 Hypothalamus GATTGTCTAA (6) 1.8 0.0018 Hypothalamus GTATGCCCTC (7) 1.8 0.0018 Hypothalamus GTATTTTATT (6) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina TGAGAGAAAA (8) 11.3 0.0113 E12.5 retina ACATTTAAAA (10) 5.6 0.0056 E12.5 retina CAAGACTGAA (9) 5.6 0.0056 E12.5 retina TTGGTGCTTC (8) 5.6 0.0056 E12.5 retina ACATTTATTG (5) 3.8 0.0038 E12.5 retina GATTGTCTAA (6) 3.8 0.0038 E12.5 retina AAACCCTTAT (5) 1.9 0.0019 E12.5 retina CTTTTCCCTC (6) 1.9 0.0019 E12.5 retina GAATTTTATT (11) 1.9 0.0019 E12.5 retina GTATTTTATT (6) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina GAATTTTATT (11) 12.8 0.0128 E14.5 retina TTGGTGCTTC (8) 12.8 0.0128 E14.5 retina ACATTTAAAA (10) 5.5 0.0055 E14.5 retina GATTGTCTAA (6) 3.6 0.0036 E14.5 retina GTATTTTATT (6) 3.6 0.0036 E14.5 retina CCTACAGTCC (6) 1.8 0.0018 E14.5 retina TGAGAGAAAA (8) 1.8 0.0018 E14.5 retina TTTCATTGTT (6) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina TTGGTGCTTC (8) 12.7 0.0127 E16.5 retina GAATTTTATT (11) 7.2 0.0072 E16.5 retina TGAGAGAAAA (8) 5.4 0.0054 E16.5 retina ACATTTAAAA (10) 3.6 0.0036 E16.5 retina ACATTTATTG (5) 3.6 0.0036 E16.5 retina ATTGGTGTTA (5) 3.6 0.0036 E16.5 retina AAACCCTTAT (5) 1.8 0.0018 E16.5 retina CTTTTCCCTC (6) 1.8 0.0018 E16.5 retina GTATGCCCTC (7) 1.8 0.0018 E16.5 retina GTATTTTATT (6) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina TGAGAGAAAA (8) 30.9 0.0309 E18.5 retina ACATTTAAAA (10) 9.1 0.0091 E18.5 retina GAATTTTATT (11) 9.1 0.0091 E18.5 retina ACATTTATTG (5) 1.8 0.0018 E18.5 retina CCTACAGTCC (6) 1.8 0.0018 E18.5 retina CGTCTGAGAA (6) 1.8 0.0018 E18.5 retina GTATTTTATT (6) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina TTGGTGCTTC (8) 7.9 0.0079 P0.5 retina TTTCATTGTT (6) 5.9 0.0059 P0.5 retina AAACCCTTAT (5) 3.9 0.0039 P0.5 retina GAATTTTATT (11) 3.9 0.0039 P0.5 retina CAAGACTGAA (9) 2 0.002 P0.5 retina CCTACAGTCC (6) 2 0.002 P0.5 retina TGAGAGAAAA (8) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina TTGGTGCTTC (8) 12.3 0.0123 P2.5 retina TGAGAGAAAA (8) 10.6 0.0106 P2.5 retina CTTTTCCCTC (6) 5.3 0.0053 P2.5 retina AAACCCTTAT (5) 3.5 0.0035 P2.5 retina ATTGGTGTTA (5) 3.5 0.0035 P2.5 retina CAAGACTGAA (9) 3.5 0.0035 P2.5 retina GAATTTTATT (11) 3.5 0.0035 P2.5 retina GTATTTTATT (6) 3.5 0.0035 P2.5 retina ACATTTAAAA (10) 1.8 0.0018 P2.5 retina ACATTTATTG (5) 1.8 0.0018 P2.5 retina CATACACTGT (7) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina TTGGTGCTTC (8) 11.9 0.0119 P4.5 retina TGAGAGAAAA (8) 9.9 0.0099 P4.5 retina ACATTTAAAA (10) 4 0.004 P4.5 retina ATTGGTGTTA (5) 4 0.004 P4.5 retina CAAGACTGAA (9) 4 0.004 P4.5 retina CTTTTCCCTC (6) 4 0.004 P4.5 retina GAATTTTATT (11) 4 0.004 P4.5 retina ACATTTATTG (5) 2 0.002 P4.5 retina CGTCTGAGAA (6) 2 0.002 P4.5 retina GATTGTCTAA (6) 2 0.002 P4.5 retina TTTCATTGTT (6) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina TGAGAGAAAA (8) 15 0.015 P6.5 retina TTGGTGCTTC (8) 6.7 0.0067 P6.5 retina AAACCCTTAT (5) 3.3 0.0033 P6.5 retina CATACACTGT (7) 3.3 0.0033 P6.5 retina CCTACAGTCC (6) 3.3 0.0033 P6.5 retina CTTTTCCCTC (6) 3.3 0.0033 P6.5 retina GAATTTTATT (11) 3.3 0.0033 P6.5 retina ACATTTAAAA (10) 1.7 0.0017 P6.5 retina ACATTTATTG (5) 1.7 0.0017 P6.5 retina CGTCTGAGAA (6) 1.7 0.0017 P6.5 retina GTATTTTATT (6) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina TTGGTGCTTC (8) 9.3 0.0093 P10.5 crx- retina ACATTTAAAA (10) 3.7 0.0037 P10.5 crx- retina GAATTTTATT (11) 3.7 0.0037 P10.5 crx- retina ACATTTATTG (5) 1.9 0.0019 P10.5 crx- retina CAAGACTGAA (9) 1.9 0.0019 P10.5 crx- retina CTTTTCCCTC (6) 1.9 0.0019 P10.5 crx- retina GAGGGTGTGT (5) 1.9 0.0019 P10.5 crx- retina TGAGAGAAAA (8) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina CTTTTCCCTC (6) 5.8 0.0058 P10.5 crx+ retina TGAGAGAAAA (8) 5.8 0.0058 P10.5 crx+ retina ACATTTAAAA (10) 3.8 0.0038 P10.5 crx+ retina GAATTTTATT (11) 3.8 0.0038 P10.5 crx+ retina TTGGTGCTTC (8) 3.8 0.0038 P10.5 crx+ retina ACATTTATTG (5) 1.9 0.0019 P10.5 crx+ retina CAAGACTGAA (9) 1.9 0.0019 P10.5 crx+ retina GATTGTCTAA (6) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal TTGGTGCTTC (8) 5.6 0.0056 Adult retinal TTTCATTGTT (6) 3.7 0.0037 Adult retinal ACATTTATTG (5) 1.9 0.0019 Adult retinal CCTACAGTCC (6) 1.9 0.0019 Adult retinal CTTTTCCCTC (6) 1.9 0.0019 Adult retinal GATTGTCTAA (6) 1.9 0.0019 Adult retinal GTATGCCCTC (7) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL TGAGAGAAAA (8) 5.7 0.0057 ONL ACATTTAAAA (10) 3.8 0.0038 ONL AAACCCTTAT (5) 1.9 0.0019 ONL ACATTTATTG (5) 1.9 0.0019 ONL CGTCTGAGAA (6) 1.9 0.0019 ONL GAATTTTATT (11) 1.9 0.0019 ONL GAGGGTGTGT (5) 1.9 0.0019 ONL GTATGCCCTC (7) 1.9 0.0019 ONL TTGGTGCTTC (8) 1.9 0.0019