Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.152699	1110001M07Rik	RIKEN cDNA 1110001M07 gene	18		68452
Mm.152699	AA407331	expressed sequence AA407331	18		106839
Mm.152699	7120426M23Rik	RIKEN cDNA 7120426M23 gene	18		319898
Mm.152699	Smad2	MAD homolog 2 (Drosophila)	18	18 48.0 cM	17126
Gene Ontology	anterior/posterior pattern formation | cell fate commitment | common-partner SMAD protein phosphorylation | intracellular | mesoderm formation | nucleus | organogenesis | positive regulation of transcription from Pol II promoter | protein binding | regulation of transcription, DNA-dependent | SMAD protein heteromerization | transcription factor binding | transcription factor complex | transforming growth factor beta receptor signaling pathway
Human Homolog	SMAD2[SMAD, mothers against DPP homolog 2 (Drosophila)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 41 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TATGATCCCG (5) 1.6 0.0016 P8 Cb GC TCCTGGCTCT (6) 1.6 0.0016 Cb medulloblastoma CACAGGTGGC (5) 2.3 0.0023 Cb medulloblastoma TATGTACATA (12) 2.3 0.0023 P8 GC+1d culture AGCTCAAGGC (6) 1.1 0.0011 P8 GC+SHH+1d culture AGCTCAAGGC (6) 1.2 0.0012 P8 GC+SHH+1d culture CACAGGTGGC (5) 1.2 0.0012 P8 GC+SHH+1d culture GCTGTCAATA (6) 1.2 0.0012 P8 GC+SHH+1d culture TCCTGGCTCT (6) 1.2 0.0012 E15 cortex TAATAATGGC (5) 4.9 0.0049 Hypothalamus TATGATCCCG (5) 3.6 0.0036 Hypothalamus CACAGGTGGC (5) 1.8 0.0018 Hypothalamus GCTGTCAATA (6) 1.8 0.0018 Hypothalamus TAATAATGGC (5) 1.8 0.0018 Hypothalamus TATGTACATA (12) 1.8 0.0018 E12.5 retina AGCTCAAGGC (6) 1.9 0.0019 E12.5 retina CACAGGTGGC (5) 1.9 0.0019 E12.5 retina TATGTACATA (12) 1.9 0.0019 E14.5 retina CACAGGTGGC (5) 3.6 0.0036 E14.5 retina TAATAATGGC (5) 1.8 0.0018 E14.5 retina TTTTCCCTTT (7) 1.8 0.0018 E16.5 retina CACAGGTGGC (5) 3.6 0.0036 E16.5 retina GCTGTCAATA (6) 3.6 0.0036 E16.5 retina TATGTACATA (12) 1.8 0.0018 P0.5 retina TATGATCCCG (5) 2 0.002 P2.5 retina TATGTACATA (12) 3.5 0.0035 P2.5 retina TAATAATGGC (5) 1.8 0.0018 P2.5 retina TCCTGGCTCT (6) 1.8 0.0018 P4.5 retina TAATAATGGC (5) 2 0.002 P6.5 retina AGCTCAAGGC (6) 1.7 0.0017 P6.5 retina TATGTACATA (12) 1.7 0.0017 P6.5 retina TTTTCCCTTT (7) 1.7 0.0017 P10.5 crx- retina GCTGTCAATA (6) 1.9 0.0019 P10.5 crx+ retina CACAGGTGGC (5) 3.8 0.0038 P10.5 crx+ retina TATGTACATA (12) 1.9 0.0019 Adult retinal TATGATCCCG (5) 3.7 0.0037 Adult retinal AGCTCAAGGC (6) 1.9 0.0019 ONL AGCTCAAGGC (6) 1.9 0.0019 ONL GCTGTCAATA (6) 1.9 0.0019 ONL TATGTACATA (12) 1.9 0.0019 ONL TTTTCCCTTT (7) 1.9 0.0019