Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.153911	Lcp1	lymphocyte cytosolic protein 1	14	14 42.0 cM	18826
Gene Ontology	actin binding | calcium ion binding
Human Homolog	LCP1[lymphocyte cytosolic protein 1 (L-plastin)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 90 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTAAAAAAAA (80) 13.1 0.0131 P8 Cb GC GCCTTAAAAC 3.3 0.0033 P8 Cb GC ACCAATTTGG 1.6 0.0016 P8 Cb GC GCCTTAAAAA (9) 1.6 0.0016 P8 Cb GC TTAAAAAAAT (4) 1.6 0.0016 Cb medulloblastoma TTAAAAAAAA (80) 53.2 0.0532 Cb medulloblastoma ACTTGAAAAA (5) 2.3 0.0023 Cb medulloblastoma CTCCCGCTCT (2) 2.3 0.0023 Cb medulloblastoma GGGGGAGGGG (18) 2.3 0.0023 P8 GC+1d culture TTAAAAAAAA (80) 28.5 0.0285 P8 GC+1d culture GGGGGAGGGG (18) 2.3 0.0023 P8 GC+1d culture ACTTGAAAAA (5) 1.1 0.0011 P8 GC+1d culture CTCCCGCTCT (2) 1.1 0.0011 P8 GC+1d culture GCTTAAAAGA (5) 1.1 0.0011 P8 GC+SHH+1d culture TTAAAAAAAA (80) 34 0.034 P8 GC+SHH+1d culture CTCCCGCTCT (2) 2.3 0.0023 P8 GC+SHH+1d culture TTAAAAAAAT (4) 1.2 0.0012 P8 GC+SHH+1d culture TTGGCGAAGA (2) 1.2 0.0012 3T3 fibroblasts CTCCCGCTCT (2) 3.5 0.0035 3T3 fibroblasts GGGGGAGGGG (18) 3.5 0.0035 E15 cortex CTGTAGGCGA 4.9 0.0049 E15 cortex GCTGCCCAGG (10) 4.9 0.0049 E15 cortex TTAAAAAAAA (80) 4.9 0.0049 P1 cortex TTAAAAAAAA (80) 13.6 0.0136 P1 cortex CTCCCGCTCT (2) 4.5 0.0045 P1 cortex CTGCACAGGG (2) 4.5 0.0045 P1 cortex GGGGGAGGGG (18) 4.5 0.0045 Hypothalamus TTAAAAAAAA (80) 19.9 0.0199 Hypothalamus CCTTCCCCCA (3) 3.6 0.0036 Hypothalamus TTGGCGAAGA (2) 3.6 0.0036 Hypothalamus CTCCCGCTCT (2) 1.8 0.0018 Hypothalamus GATTAAAAAG (6) 1.8 0.0018 Hypothalamus GCCTTAAAAA (9) 1.8 0.0018 E12.5 retina TTAAAAAAAA (80) 11.3 0.0113 E12.5 retina ACCAATTTGG 3.8 0.0038 E12.5 retina GGGGGAGGGG (18) 3.8 0.0038 E14.5 retina TTAAAAAAAA (80) 16.4 0.0164 E14.5 retina GCCTTAAAAC 1.8 0.0018 E16.5 retina TTAAAAAAAA (80) 16.3 0.0163 E16.5 retina ATTTATTTTA (3) 3.6 0.0036 E16.5 retina CCTTCCCCCA (3) 1.8 0.0018 E16.5 retina GCTGCCCAGG (10) 1.8 0.0018 E18.5 retina TTAAAAAAAA (80) 50.9 0.0509 E18.5 retina ACTTGAAAAA (5) 1.8 0.0018 E18.5 retina GCCTTAAAAA (9) 1.8 0.0018 E18.5 retina GGGGGAGGGG (18) 1.8 0.0018 E18.5 retina TTAAAAAAAT (4) 1.8 0.0018 E18.5 retina TTGGCGAAGA (2) 1.8 0.0018 P0.5 retina TTAAAAAAAA (80) 17.7 0.0177 P0.5 retina CTCCCGCTCT (2) 3.9 0.0039 P0.5 retina CTGTAGGCGA 3.9 0.0039 P0.5 retina ACTTGAAAAA (5) 2 0.002 P0.5 retina CTGCACAGGG (2) 2 0.002 P2.5 retina TTAAAAAAAA (80) 40.5 0.0405 P2.5 retina GCCTTAAAAA (9) 1.8 0.0018 P2.5 retina GCTTAAAAGA (5) 1.8 0.0018 P2.5 retina GGGGGAGGGG (18) 1.8 0.0018 P4.5 retina TTAAAAAAAA (80) 47.6 0.0476 P4.5 retina ACCAATTTGG 4 0.004 P4.5 retina CTGCACAGGG (2) 2 0.002 P4.5 retina GCTTAAAAGA (5) 2 0.002 P6.5 retina TTAAAAAAAA (80) 16.7 0.0167 P6.5 retina GCTTAAAAGA (5) 3.3 0.0033 P6.5 retina ACCAATTTGG 1.7 0.0017 P6.5 retina ATTTATTTTA (3) 1.7 0.0017 P6.5 retina CTCCCGCTCT (2) 1.7 0.0017 P6.5 retina GCCTTAAAAA (9) 1.7 0.0017 P6.5 retina GGGGGAGGGG (18) 1.7 0.0017 P10.5 crx- retina TTAAAAAAAA (80) 13 0.013 P10.5 crx- retina GCTTAAAAGA (5) 9.3 0.0093 P10.5 crx- retina ACCAATTTGG 1.9 0.0019 P10.5 crx- retina ATTTATTTTA (3) 1.9 0.0019 P10.5 crx- retina GCTGCCCAGG (10) 1.9 0.0019 P10.5 crx- retina GGGGGAGGGG (18) 1.9 0.0019 P10.5 crx+ retina TTAAAAAAAA (80) 5.8 0.0058 P10.5 crx+ retina ACTTGAAAAA (5) 1.9 0.0019 P10.5 crx+ retina ATTTATTTTA (3) 1.9 0.0019 P10.5 crx+ retina GGGGGAGGGG (18) 1.9 0.0019 Adult retinal CTCCCGCTCT (2) 7.4 0.0074 Adult retinal TTAAAAAAAA (80) 7.4 0.0074 Adult retinal ACCAATTTGG 1.9 0.0019 Adult retinal GATTAAAAAG (6) 1.9 0.0019 Adult retinal GCTGCCCAGG (10) 1.9 0.0019 Adult retinal GCTTAAAAGA (5) 1.9 0.0019 Adult retinal GGGGGAGGGG (18) 1.9 0.0019 ONL TTAAAAAAAA (80) 7.7 0.0077 ONL CTCCCGCTCT (2) 5.7 0.0057 ONL ACTTGAAAAA (5) 3.8 0.0038 ONL GCTTAAAAGA (5) 3.8 0.0038 ONL GATTAAAAAG (6) 1.9 0.0019