Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.157105	Psmc1	protease (prosome, macropain) 26S subunit, ATPase 1	12	12 41.0 cM	19179
Gene Ontology	ATP binding | ATPase activity | cytoplasm | cytosol | hydrolase activity | nucleotide binding | nucleus | proteasome complex (sensu Eukarya) | protein catabolism
Human Homolog	PSMC1[proteasome (prosome, macropain) 26S subunit, ATPase, 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 83 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTGTAATCC (34) 6.5 0.0065 P8 Cb GC CGCCGTCCAT (3) 3.3 0.0033 P8 Cb GC GCAAAGGATG 3.3 0.0033 P8 Cb GC GAGGAGGAAT (2) 1.6 0.0016 Cb medulloblastoma CCTGTAATCC (34) 11.6 0.0116 Cb medulloblastoma GCAAAGGATG 9.2 0.0092 Cb medulloblastoma AACATTGTGG (4) 2.3 0.0023 Cb medulloblastoma CGCCGTCCAT (3) 2.3 0.0023 Cb medulloblastoma GAGGAGGAAT (2) 2.3 0.0023 Cb medulloblastoma GCCACAAACC (3) 2.3 0.0023 P8 GC+1d culture GCAAAGGATG 8 0.008 P8 GC+1d culture TTCCTTCAGT (4) 4.6 0.0046 P8 GC+1d culture CCTGTAATCC (34) 1.1 0.0011 P8 GC+1d culture GTCCTGGGGG (7) 1.1 0.0011 P8 GC+SHH+1d culture TTCCTTCAGT (4) 5.9 0.0059 P8 GC+SHH+1d culture CCTGTAATCC (34) 4.7 0.0047 P8 GC+SHH+1d culture GCAAAGGATG 4.7 0.0047 3T3 fibroblasts CCTGTAATCC (34) 10.5 0.0105 3T3 fibroblasts GCAAAGGATG 10.5 0.0105 3T3 fibroblasts TTCCTTCAGT (4) 10.5 0.0105 3T3 fibroblasts GTCCTGGGGG (7) 7 0.007 E15 cortex GTCCTGGGGG (7) 19.8 0.0198 E15 cortex GCAAAGGATG 9.9 0.0099 E15 cortex AACATTGTGG (4) 4.9 0.0049 E15 cortex CCTGTAATCC (34) 4.9 0.0049 E15 cortex GCCACAAACC (3) 4.9 0.0049 P1 cortex CCTGTAATCC (34) 13.6 0.0136 P1 cortex GCAAAGGATG 4.5 0.0045 P1 cortex TTCCTTCAGT (4) 4.5 0.0045 Hypothalamus CCTGTAATCC (34) 5.4 0.0054 Hypothalamus GCAAAGGATG 5.4 0.0054 Hypothalamus TTCCTTCAGT (4) 3.6 0.0036 Hypothalamus GAGGAGGAAT (2) 1.8 0.0018 Hypothalamus GCCCCCCTCC (3) 1.8 0.0018 E12.5 retina GCAAAGGATG 9.4 0.0094 E12.5 retina CCTGTAATCC (34) 3.8 0.0038 E12.5 retina TTCCTTCAGT (4) 1.9 0.0019 E14.5 retina CCTGTAATCC (34) 5.5 0.0055 E14.5 retina GCAAAGGATG 3.6 0.0036 E14.5 retina GCCACAAACC (3) 1.8 0.0018 E14.5 retina GGGGGGTTTT (8) 1.8 0.0018 E14.5 retina TTCCTTCAGT (4) 1.8 0.0018 E16.5 retina TTCCTTCAGT (4) 12.7 0.0127 E16.5 retina CCTGTAATCC (34) 3.6 0.0036 E16.5 retina AACATTGTGG (4) 1.8 0.0018 E16.5 retina GCAAAGGATG 1.8 0.0018 E16.5 retina GCCACAAACC (3) 1.8 0.0018 E18.5 retina GTCCTGGGGG (7) 5.5 0.0055 E18.5 retina CCTGTAATCC (34) 1.8 0.0018 E18.5 retina GCAAAGGATG 1.8 0.0018 E18.5 retina GCCCCCCTCC (3) 1.8 0.0018 P0.5 retina GCAAAGGATG 5.9 0.0059 P0.5 retina CCTGTAATCC (34) 3.9 0.0039 P0.5 retina GTCCTGGGGG (7) 3.9 0.0039 P0.5 retina GGGGGGTTTT (8) 2 0.002 P0.5 retina TTCCTTCAGT (4) 2 0.002 P2.5 retina CCTGTAATCC (34) 3.5 0.0035 P2.5 retina GCAAAGGATG 3.5 0.0035 P2.5 retina GTCCTGGGGG (7) 3.5 0.0035 P2.5 retina GGGGGGTTTT (8) 1.8 0.0018 P2.5 retina TTCCTTCAGT (4) 1.8 0.0018 P4.5 retina CCTGTAATCC (34) 5.9 0.0059 P4.5 retina TTCCTTCAGT (4) 4 0.004 P4.5 retina GCAAAGGATG 2 0.002 P4.5 retina GCCCCCCTCC (3) 2 0.002 P6.5 retina GCAAAGGATG 8.3 0.0083 P6.5 retina CCTGTAATCC (34) 1.7 0.0017 P6.5 retina GGGGGGTTTT (8) 1.7 0.0017 P6.5 retina GTCCTGGGGG (7) 1.7 0.0017 P6.5 retina TTCCTTCAGT (4) 1.7 0.0017 P10.5 crx- retina GCAAAGGATG 16.7 0.0167 P10.5 crx- retina CCTGTAATCC (34) 3.7 0.0037 P10.5 crx- retina AACATTGTGG (4) 1.9 0.0019 P10.5 crx+ retina GCAAAGGATG 7.7 0.0077 P10.5 crx+ retina CCTGTAATCC (34) 3.8 0.0038 P10.5 crx+ retina GTCCTGGGGG (7) 1.9 0.0019 Adult retinal GCAAAGGATG 13 0.013 Adult retinal CCTGTAATCC (34) 3.7 0.0037 Adult retinal TTCCTTCAGT (4) 3.7 0.0037 Adult retinal GCCCCCCTCC (3) 1.9 0.0019 ONL CCTGTAATCC (34) 3.8 0.0038 ONL GCAAAGGATG 3.8 0.0038 ONL GAGGAGGAAT (2) 1.9 0.0019