Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.159453	Thap6	THAP domain containing 6	5		75186
Mm.159453	Rchy1	ring finger and CHY zinc finger domain containing 1	5		68098
Gene Ontology	protein ubiquitination | receptor activity | ubiquitin ligase complex | ubiquitin-protein ligase activity | zinc ion binding
Human Homolog	RCHY1[ring finger and CHY zinc finger domain containing 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 122 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC TGCCACCACG (9) 8.2 0.0082 P8 Cb GC AAAATAAAAA (28) 6.5 0.0065 P8 Cb GC GAACTTTAAG (6) 3.3 0.0033 P8 Cb GC TTTCTGTACA (4) 3.3 0.0033 P8 Cb GC ATTTTTTTTT (36) 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma AAAATAAAAA (28) 9.2 0.0092 Cb medulloblastoma TGCCACCACG (9) 9.2 0.0092 Cb medulloblastoma AAAAGGTAAA (6) 6.9 0.0069 Cb medulloblastoma GAACTTTAAG (6) 4.6 0.0046 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture AAAATAAAAA (28) 8 0.008 P8 GC+1d culture TTTCTGTACA (4) 5.7 0.0057 P8 GC+1d culture GAACTTTAAG (6) 4.6 0.0046 P8 GC+1d culture TGCCACCACG (9) 3.4 0.0034 P8 GC+1d culture ATTTTTTTTT (36) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture TGCCACCACG (9) 8.2 0.0082 P8 GC+SHH+1d culture TTTCTGTACA (4) 8.2 0.0082 P8 GC+SHH+1d culture AAAATAAAAA (28) 5.9 0.0059 P8 GC+SHH+1d culture ATTTTTTTTT (36) 3.5 0.0035 P8 GC+SHH+1d culture GACTTAAAGT (7) 3.5 0.0035 P8 GC+SHH+1d culture GTGAAGGTTC (4) 2.3 0.0023 P8 GC+SHH+1d culture GAACTTTAAG (6) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts TGCCACCACG (9) 14 0.014 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex TGCCACCACG (9) 14.8 0.0148 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex AAAATAAAAA (28) 9.1 0.0091 P1 cortex ATTTTTTTTT (36) 4.5 0.0045 P1 cortex GAACTTTAAG (6) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus AAAATAAAAA (28) 3.6 0.0036 Hypothalamus GAACTTTAAG (6) 3.6 0.0036 Hypothalamus TGCCACCACG (9) 3.6 0.0036 Hypothalamus TTTCTGTACA (4) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina AAAATAAAAA (28) 5.6 0.0056 E12.5 retina TGCCACCACG (9) 3.8 0.0038 E12.5 retina TTTCTGTACA (4) 3.8 0.0038 E12.5 retina GTGAAGGTTC (4) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina AAAATAAAAA (28) 14.6 0.0146 E14.5 retina GAACTTTAAG (6) 5.5 0.0055 E14.5 retina TTTCTGTACA (4) 5.5 0.0055 E14.5 retina ATTTTTTTTT (36) 1.8 0.0018 E14.5 retina GACTTAAAGT (7) 1.8 0.0018 E14.5 retina TGCCACCACG (9) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina AAAATAAAAA (28) 10.9 0.0109 E16.5 retina TGCCACCACG (9) 9.1 0.0091 E16.5 retina GTGAAGGTTC (4) 5.4 0.0054 E16.5 retina TTTCTGTACA (4) 5.4 0.0054 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina AAAATAAAAA (28) 16.4 0.0164 E18.5 retina GACTTAAAGT (7) 7.3 0.0073 E18.5 retina TTTCTGTACA (4) 7.3 0.0073 E18.5 retina TGCCACCACG (9) 5.5 0.0055 E18.5 retina AAAAGGTAAA (6) 1.8 0.0018 E18.5 retina ATTTTTTTTT (36) 1.8 0.0018 E18.5 retina GAACTTTAAG (6) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina TTTCTGTACA (4) 7.9 0.0079 P0.5 retina AAAATAAAAA (28) 5.9 0.0059 P0.5 retina ATTTTTTTTT (36) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina AAAAGGTAAA (6) 2 0.002 P0.5 retina GAACTTTAAG (6) 2 0.002 P0.5 retina GTGAAGGTTC (4) 2 0.002 P0.5 retina TGCCACCACG (9) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina AAAATAAAAA (28) 19.4 0.0194 P2.5 retina TGCCACCACG (9) 8.8 0.0088 P2.5 retina ATTTTTTTTT (36) 3.5 0.0035 P2.5 retina GAACTTTAAG (6) 3.5 0.0035 P2.5 retina GACTTAAAGT (7) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina AAAATAAAAA (28) 21.8 0.0218 P4.5 retina GAACTTTAAG (6) 7.9 0.0079 P4.5 retina TTTCTGTACA (4) 7.9 0.0079 P4.5 retina ATTTTTTTTT (36) 4 0.004 P4.5 retina GACTTAAAGT (7) 4 0.004 P4.5 retina TGCCACCACG (9) 4 0.004 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina GTGAAGGTTC (4) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina AAAATAAAAA (28) 11.7 0.0117 P6.5 retina TTTCTGTACA (4) 6.7 0.0067 P6.5 retina TGCCACCACG (9) 5 0.005 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina AAAAGGTAAA (6) 1.7 0.0017 P6.5 retina GACTTAAAGT (7) 1.7 0.0017 P6.5 retina GTGAAGGTTC (4) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina TTTCTGTACA (4) 9.3 0.0093 P10.5 crx- retina GAACTTTAAG (6) 7.4 0.0074 P10.5 crx- retina AAAATAAAAA (28) 3.7 0.0037 P10.5 crx- retina GACTTAAAGT (7) 1.9 0.0019 P10.5 crx- retina TGCCACCACG (9) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina TGCCACCACG (9) 5.8 0.0058 P10.5 crx+ retina GAACTTTAAG (6) 3.8 0.0038 P10.5 crx+ retina TTTCTGTACA (4) 3.8 0.0038 P10.5 crx+ retina AAAATAAAAA (28) 1.9 0.0019 P10.5 crx+ retina GACTTAAAGT (7) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal TGCCACCACG (9) 7.4 0.0074 Adult retinal TTTCTGTACA (4) 3.7 0.0037 Adult retinal AAAATAAAAA (28) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL AAAATAAAAA (28) 11.5 0.0115 ONL GTCATAGCTG (590) 5.7 0.0057 ONL GAACTTTAAG (6) 1.9 0.0019 ONL GTGAAGGTTC (4) 1.9 0.0019 ONL TGCCACCACG (9) 1.9 0.0019 ONL TTTCTGTACA (4) 1.9 0.0019