Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.17185	Lgmn	legumain	12		19141
Gene Ontology	apical part of cell | cysteine-type endopeptidase activity | cysteine-type peptidase activity | hydrolase activity | late endosome | legumain activity | lysosome | negative regulation of body size | proteolysis and peptidolysis
Human Homolog	LGMN[legumain]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 93 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC GACAAAGGTG (5) 3.3 0.0033 P8 Cb GC AGAGACAAGG (5) 1.6 0.0016 P8 Cb GC TCTTCATTTA (3) 1.6 0.0016 Cb medulloblastoma GACAAAGGTG (5) 6.9 0.0069 Cb medulloblastoma AAAGTGATGC 2.3 0.0023 Cb medulloblastoma AGAGACAAGG (5) 2.3 0.0023 Cb medulloblastoma GACAAAGTGT (2) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture GACAAAGGTG (5) 8 0.008 P8 GC+1d culture TCTTCATTTA (3) 2.3 0.0023 P8 GC+1d culture TCACAGAAAA (2) 1.1 0.0011 P8 GC+SHH+1d culture GACAAAGGTG (5) 7 0.007 P8 GC+SHH+1d culture GACAAAGTGT (2) 5.9 0.0059 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture AGAGACAAGG (5) 3.5 0.0035 P8 GC+SHH+1d culture TCACAGAAAA (2) 2.3 0.0023 P8 GC+SHH+1d culture TCTTCATTTA (3) 1.2 0.0012 3T3 fibroblasts AGAGACAAGG (5) 3.5 0.0035 3T3 fibroblasts GACAAAGTGT (2) 3.5 0.0035 3T3 fibroblasts TCTTCATTTA (3) 3.5 0.0035 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex TCTTCATTTA (3) 27.3 0.0273 P1 cortex AGAGACAAGG (5) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus AGAGACAAGG (5) 7.2 0.0072 Hypothalamus GACAAAGGTG (5) 7.2 0.0072 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus TCACAGAAAA (2) 3.6 0.0036 Hypothalamus AAAGTGATGC 1.8 0.0018 E12.5 retina GACAAAGGTG (5) 18.8 0.0188 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina GACAAAGTGT (2) 1.9 0.0019 E12.5 retina TCTTCATTTA (3) 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina GACAAAGGTG (5) 5.5 0.0055 E14.5 retina TCTTCATTTA (3) 3.6 0.0036 E14.5 retina AGAGACAAGG (5) 1.8 0.0018 E14.5 retina TCACAGAAAA (2) 1.8 0.0018 E16.5 retina GACAAAGGTG (5) 16.3 0.0163 E16.5 retina AGAGACAAGG (5) 10.9 0.0109 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina TCACAGAAAA (2) 1.8 0.0018 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina AGAGACAAGG (5) 5.5 0.0055 E18.5 retina GACAAAGGTG (5) 1.8 0.0018 E18.5 retina TCACAGAAAA (2) 1.8 0.0018 P0.5 retina AGAGACAAGG (5) 19.6 0.0196 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina GACAAAGGTG (5) 7.9 0.0079 P0.5 retina GACAAAGTGT (2) 7.9 0.0079 P0.5 retina TCACAGAAAA (2) 3.9 0.0039 P0.5 retina GCACAACTCA 2 0.002 P0.5 retina TCTTCATTTA (3) 2 0.002 P2.5 retina AGAGACAAGG (5) 19.4 0.0194 P2.5 retina GACAAAGGTG (5) 10.6 0.0106 P2.5 retina TCACAGAAAA (2) 8.8 0.0088 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina TCTTCATTTA (3) 5.3 0.0053 P4.5 retina AGAGACAAGG (5) 23.8 0.0238 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina TCTTCATTTA (3) 5.9 0.0059 P4.5 retina TCACAGAAAA (2) 4 0.004 P4.5 retina GACAAAGTGT (2) 2 0.002 P4.5 retina GCACAACTCA 2 0.002 P6.5 retina AGAGACAAGG (5) 41.7 0.0417 P6.5 retina TCACAGAAAA (2) 8.3 0.0083 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina GACAAAGGTG (5) 5 0.005 P6.5 retina GACAAAGTGT (2) 3.3 0.0033 P10.5 crx- retina AGAGACAAGG (5) 52 0.052 P10.5 crx- retina TCACAGAAAA (2) 20.4 0.0204 P10.5 crx- retina GACAAAGTGT (2) 11.1 0.0111 P10.5 crx- retina AAAGTGATGC 1.9 0.0019 P10.5 crx- retina GACAAAGGTG (5) 1.9 0.0019 P10.5 crx+ retina AGAGACAAGG (5) 15.4 0.0154 P10.5 crx+ retina GACAAAGGTG (5) 7.7 0.0077 P10.5 crx+ retina GACAAAGTGT (2) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina GCACAACTCA 1.9 0.0019 P10.5 crx+ retina TCTTCATTTA (3) 1.9 0.0019 Adult retinal AGAGACAAGG (5) 7.4 0.0074 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal GACAAAGGTG (5) 5.6 0.0056 Adult retinal GACAAAGTGT (2) 5.6 0.0056 Adult retinal TCACAGAAAA (2) 1.9 0.0019 ONL AGAGACAAGG (5) 13.4 0.0134 ONL TCACAGAAAA (2) 9.6 0.0096 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL GACAAAGTGT (2) 1.9 0.0019 ONL GCACAACTCA 1.9 0.0019 ONL TCTTCATTTA (3) 1.9 0.0019