Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.172411	Txnl4	thioredoxin-like 4	18		27366
Mm.172411	D18Wsu98e	DNA segment, Chr 18, Wayne State University 98, expressed	18	18 50.0 cM	28062
Gene Ontology	transferase activity
Human Homolog	MGC10646[hypothetical protein MGC10646]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 202 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC GCGAGGGAGC (2) 16.3 0.0163 P8 Cb GC GCCGAGGAAG (3) 11.4 0.0114 P8 Cb GC GCCTCTGCAT (29) 8.2 0.0082 P8 Cb GC TCTGTGTCCT (9) 6.5 0.0065 P8 Cb GC AAGAGCAACC (8) 1.6 0.0016 P8 Cb GC CTGCTCAGTA (2) 1.6 0.0016 P8 Cb GC GAAAACAAAC (6) 1.6 0.0016 P8 Cb GC GCCTCTCTTG (8) 1.6 0.0016 P8 Cb GC GCTGCTGCCC (12) 1.6 0.0016 P8 Cb GC GGGAAAAAAA (36) 1.6 0.0016 P8 Cb GC TCAGGAAGAG (6) 1.6 0.0016 Cb medulloblastoma GGGAAAAAAA (36) 92.5 0.0925 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma GCGAGGGAGC (2) 18.5 0.0185 Cb medulloblastoma GAAAACAAAC (6) 11.6 0.0116 Cb medulloblastoma GCCTCTGCAT (29) 6.9 0.0069 Cb medulloblastoma CAGCTGCACC (3) 4.6 0.0046 Cb medulloblastoma CTGCTCAGTA (2) 4.6 0.0046 Cb medulloblastoma GGACCAGGGT (3) 4.6 0.0046 Cb medulloblastoma TCTGTGTCCT (9) 4.6 0.0046 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture GCCTCTGCAT (29) 20.5 0.0205 P8 GC+1d culture GCGAGGGAGC (2) 9.1 0.0091 P8 GC+1d culture CTGCTCAGTA (2) 5.7 0.0057 P8 GC+1d culture CAGCTGCACC (3) 3.4 0.0034 P8 GC+1d culture TGGCCTGTGC (6) 2.3 0.0023 P8 GC+1d culture CAGAGCTGCA (3) 1.1 0.0011 P8 GC+1d culture GAAAACAAAC (6) 1.1 0.0011 P8 GC+1d culture GCCGAGGAAG (3) 1.1 0.0011 P8 GC+1d culture GCTGCTGCCC (12) 1.1 0.0011 P8 GC+1d culture GGGAAAAAAA (36) 1.1 0.0011 P8 GC+1d culture TCTGTGTCCT (9) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture GCGAGGGAGC (2) 22.2 0.0222 P8 GC+SHH+1d culture GCCTCTGCAT (29) 9.4 0.0094 P8 GC+SHH+1d culture CAGCTGCACC (3) 4.7 0.0047 P8 GC+SHH+1d culture TCTGTGTCCT (9) 3.5 0.0035 P8 GC+SHH+1d culture CTGCTCAGTA (2) 2.3 0.0023 P8 GC+SHH+1d culture GCCGAGGAAG (3) 2.3 0.0023 P8 GC+SHH+1d culture CAGAGCTGCA (3) 1.2 0.0012 P8 GC+SHH+1d culture CATCTCCATC (2) 1.2 0.0012 P8 GC+SHH+1d culture CATTTCCATC (4) 1.2 0.0012 P8 GC+SHH+1d culture GGGAAAAAAA (36) 1.2 0.0012 P8 GC+SHH+1d culture GTGGTGCAAG (7) 1.2 0.0012 P8 GC+SHH+1d culture TGGCCTGTGC (6) 1.2 0.0012 P8 GC+SHH+1d culture TTCAGGGAAA (4) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts GCCGAGGAAG (3) 17.5 0.0175 3T3 fibroblasts GTGGTGCAAG (7) 14 0.014 3T3 fibroblasts GCGAGGGAGC (2) 10.5 0.0105 3T3 fibroblasts CAGCTGCACC (3) 7 0.007 3T3 fibroblasts CTGCTCAGTA (2) 7 0.007 3T3 fibroblasts GCCTCTGCAT (29) 7 0.007 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex GCCTCTGCAT (29) 39.6 0.0396 E15 cortex GCGAGGGAGC (2) 19.8 0.0198 E15 cortex CTGCTCAGTA (2) 4.9 0.0049 E15 cortex GCCGAGGAAG (3) 4.9 0.0049 E15 cortex TCTGTGTCCT (9) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex GCCTCTGCAT (29) 18.2 0.0182 P1 cortex AGAACCTGGC (6) 4.5 0.0045 P1 cortex GGGAAAAAAA (36) 4.5 0.0045 P1 cortex TCTGTGTCCT (9) 4.5 0.0045 Hypothalamus GGGAAAAAAA (36) 41.7 0.0417 Hypothalamus GCGAGGGAGC (2) 27.2 0.0272 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus GCCTCTGCAT (29) 10.9 0.0109 Hypothalamus GAGGCACACC (2) 3.6 0.0036 Hypothalamus GCCTCTCTTG (8) 3.6 0.0036 Hypothalamus CAGAGCTGCA (3) 1.8 0.0018 Hypothalamus CAGCACTGGA (4) 1.8 0.0018 Hypothalamus GAAAACAAAC (6) 1.8 0.0018 Hypothalamus GCTCTCAACC (3) 1.8 0.0018 Hypothalamus GCTGCTGCCC (12) 1.8 0.0018 Hypothalamus GGACCAGGGT (3) 1.8 0.0018 Hypothalamus TCTGTGTCCT (9) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina GCGAGGGAGC (2) 20.7 0.0207 E12.5 retina GCCTCTGCAT (29) 11.3 0.0113 E12.5 retina AAGAGCAACC (8) 5.6 0.0056 E12.5 retina CTGCTCAGTA (2) 5.6 0.0056 E12.5 retina TCTGTGTCCT (9) 5.6 0.0056 E12.5 retina GTGGTGCAAG (7) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina GCGAGGGAGC (2) 16.4 0.0164 E14.5 retina GCCTCTGCAT (29) 14.6 0.0146 E14.5 retina GCCGAGGAAG (3) 12.8 0.0128 E14.5 retina CTGCTCAGTA (2) 3.6 0.0036 E14.5 retina TCTGTGTCCT (9) 3.6 0.0036 E14.5 retina AAGAGCAACC (8) 1.8 0.0018 E14.5 retina CAGAGCTGCA (3) 1.8 0.0018 E14.5 retina CATCTCCATC (2) 1.8 0.0018 E14.5 retina CATTTCCATC (4) 1.8 0.0018 E14.5 retina GGGAAAAAAA (36) 1.8 0.0018 E14.5 retina GTGGTGCAAG (7) 1.8 0.0018 E14.5 retina TCAGGAAGAG (6) 1.8 0.0018 E14.5 retina TCAGGGAAGA (2) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina GCCGAGGAAG (3) 18.1 0.0181 E16.5 retina GCCTCTGCAT (29) 16.3 0.0163 E16.5 retina TCTGTGTCCT (9) 9.1 0.0091 E16.5 retina AAGAGCAACC (8) 7.2 0.0072 E16.5 retina CTGCTCAGTA (2) 7.2 0.0072 E16.5 retina GCGAGGGAGC (2) 7.2 0.0072 E16.5 retina GGGAAAAAAA (36) 3.6 0.0036 E16.5 retina TCAGGAAGAG (6) 3.6 0.0036 E16.5 retina CAGCACTGGA (4) 1.8 0.0018 E16.5 retina GAGGCACACC (2) 1.8 0.0018 E16.5 retina GCTCTCAACC (3) 1.8 0.0018 E18.5 retina GCGAGGGAGC (2) 36.4 0.0364 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina GCCTCTGCAT (29) 9.1 0.0091 E18.5 retina AAGAGCAACC (8) 3.6 0.0036 E18.5 retina CAGCTGCACC (3) 3.6 0.0036 E18.5 retina TCTGTGTCCT (9) 3.6 0.0036 E18.5 retina GCCGAGGAAG (3) 1.8 0.0018 E18.5 retina GGGAAAAAAA (36) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina GCCTCTGCAT (29) 23.6 0.0236 P0.5 retina GCGAGGGAGC (2) 15.7 0.0157 P0.5 retina AAGAGCAACC (8) 7.9 0.0079 P0.5 retina GGGAAAAAAA (36) 3.9 0.0039 P0.5 retina CAGCTGCACC (3) 2 0.002 P0.5 retina CTGCTCAGTA (2) 2 0.002 P0.5 retina GCCGAGGAAG (3) 2 0.002 P0.5 retina GGACCAGGGT (3) 2 0.002 P0.5 retina GTGGTGCAAG (7) 2 0.002 P0.5 retina TCAGGAAGAG (6) 2 0.002 P0.5 retina TCTGTGTCCT (9) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina GCCTCTGCAT (29) 31.7 0.0317 P2.5 retina GCGAGGGAGC (2) 8.8 0.0088 P2.5 retina TCTGTGTCCT (9) 8.8 0.0088 P2.5 retina GGGAAAAAAA (36) 7 0.007 P2.5 retina CTGCTCAGTA (2) 3.5 0.0035 P2.5 retina TTCAGGGAAA (4) 3.5 0.0035 P2.5 retina CAGAGCTGCA (3) 1.8 0.0018 P2.5 retina CAGCTGCACC (3) 1.8 0.0018 P2.5 retina GCCTCTCTTG (8) 1.8 0.0018 P2.5 retina TCAGGAAGAG (6) 1.8 0.0018 P2.5 retina TGGCCTGTGC (6) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina GCGAGGGAGC (2) 25.8 0.0258 P4.5 retina GCCTCTGCAT (29) 19.8 0.0198 P4.5 retina GGGAAAAAAA (36) 9.9 0.0099 P4.5 retina TCTGTGTCCT (9) 5.9 0.0059 P4.5 retina GGACCAGGGT (3) 4 0.004 P4.5 retina AAGAGCAACC (8) 2 0.002 P4.5 retina CAGCTGCACC (3) 2 0.002 P4.5 retina GCCGAGGAAG (3) 2 0.002 P4.5 retina GTGGTGCAAG (7) 2 0.002 P4.5 retina TGGCCTGTGC (6) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina GCCTCTGCAT (29) 21.7 0.0217 P6.5 retina GGGAAAAAAA (36) 20 0.02 P6.5 retina GCGAGGGAGC (2) 16.7 0.0167 P6.5 retina TCTGTGTCCT (9) 6.7 0.0067 P6.5 retina GTGGTGCAAG (7) 5 0.005 P6.5 retina CAGCTGCACC (3) 1.7 0.0017 P6.5 retina CATCTCCATC (2) 1.7 0.0017 P6.5 retina CTGCTCAGTA (2) 1.7 0.0017 P6.5 retina TGGCCTGTGC (6) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina GCCTCTGCAT (29) 27.9 0.0279 P10.5 crx- retina AAGAGCAACC (8) 11.1 0.0111 P10.5 crx- retina GCGAGGGAGC (2) 11.1 0.0111 P10.5 crx- retina GGGAAAAAAA (36) 11.1 0.0111 P10.5 crx- retina GCCGAGGAAG (3) 9.3 0.0093 P10.5 crx- retina CTGCTCAGTA (2) 5.6 0.0056 P10.5 crx- retina TCTGTGTCCT (9) 3.7 0.0037 P10.5 crx- retina CAGCACTGGA (4) 1.9 0.0019 P10.5 crx- retina TGGCCTGTGC (6) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina GCCTCTGCAT (29) 32.7 0.0327 P10.5 crx+ retina GCGAGGGAGC (2) 25 0.025 P10.5 crx+ retina GGGAAAAAAA (36) 23.1 0.0231 P10.5 crx+ retina TGGCCTGTGC (6) 3.8 0.0038 P10.5 crx+ retina AAGAGCAACC (8) 1.9 0.0019 P10.5 crx+ retina CTGCTCAGTA (2) 1.9 0.0019 P10.5 crx+ retina GCTGCTGCCC (12) 1.9 0.0019 P10.5 crx+ retina TCTGTGTCCT (9) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal GGGAAAAAAA (36) 35.2 0.0352 Adult retinal GCCTCTGCAT (29) 33.3 0.0333 Adult retinal CAGCTGCACC (3) 9.3 0.0093 Adult retinal CTGCTCAGTA (2) 3.7 0.0037 Adult retinal AGAACCTGGC (6) 1.9 0.0019 Adult retinal CATTTCCATC (4) 1.9 0.0019 Adult retinal GCGAGGGAGC (2) 1.9 0.0019 Adult retinal GCTCTCAACC (3) 1.9 0.0019 Adult retinal GCTGCTGCCC (12) 1.9 0.0019 Adult retinal GTGGTGCAAG (7) 1.9 0.0019 Adult retinal TCTGTGTCCT (9) 1.9 0.0019 Adult retinal TGGCCTGTGC (6) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL GGGAAAAAAA (36) 30.6 0.0306 ONL GCCTCTGCAT (29) 17.2 0.0172 ONL CTGCTCAGTA (2) 1.9 0.0019 ONL GCTCTCAACC (3) 1.9 0.0019 ONL GTGGTGCAAG (7) 1.9 0.0019