Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.17484
Snca
synuclein, alpha
6
6 29.0 cM
20617
Gene Ontology
cytoplasm
Human Homolog
SNCA[synuclein, alpha (non A4 component of amyloid precursor)]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 45 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CTCACATAAC
(
3
)
13.1
0.0131
P8 Cb GC
AGACTATGCA
(
2
)
6.5
0.0065
Cb medulloblastoma
CTCACATAAC
(
3
)
16.2
0.0162
Cb medulloblastoma
AGACTATGCA
(
2
)
9.2
0.0092
P8 GC+1d culture
AGACTATGCA
(
2
)
30.8
0.0308
P8 GC+1d culture
CTCACATAAC
(
3
)
24
0.024
P8 GC+1d culture
ACCTTTCTCA (
3
)
2.3
0.0023
P8 GC+SHH+1d culture
AGACTATGCA
(
2
)
24.6
0.0246
P8 GC+SHH+1d culture
CTCACATAAC
(
3
)
21.1
0.0211
P8 GC+SHH+1d culture
ACCTTTCTCA (
3
)
2.3
0.0023
E15 cortex
CTCACATAAC
(
3
)
29.7
0.0297
P1 cortex
CTCACATAAC
(
3
)
36.4
0.0364
P1 cortex
AGACTATGCA
(
2
)
4.5
0.0045
Hypothalamus
AGACTATGCA
(
2
)
16.3
0.0163
Hypothalamus
CTCACATAAC
(
3
)
9.1
0.0091
Hypothalamus
ACCTTTCTCA (
3
)
1.8
0.0018
E12.5 retina
CTCACATAAC
(
3
)
9.4
0.0094
E12.5 retina
AGACTATGCA
(
2
)
1.9
0.0019
E14.5 retina
AGACTATGCA
(
2
)
10.9
0.0109
E16.5 retina
AGACTATGCA
(
2
)
12.7
0.0127
E16.5 retina
CTCACATAAC
(
3
)
10.9
0.0109
E18.5 retina
CTCACATAAC
(
3
)
12.7
0.0127
E18.5 retina
AGACTATGCA
(
2
)
1.8
0.0018
P0.5 retina
AGACTATGCA
(
2
)
11.8
0.0118
P0.5 retina
CTCACATAAC
(
3
)
11.8
0.0118
P2.5 retina
CTCACATAAC
(
3
)
21.1
0.0211
P2.5 retina
AGACTATGCA
(
2
)
3.5
0.0035
P2.5 retina
ACCTTTCTCA (
3
)
1.8
0.0018
P4.5 retina
CTCACATAAC
(
3
)
15.9
0.0159
P4.5 retina
AGACTATGCA
(
2
)
9.9
0.0099
P4.5 retina
ACCTTTCTCA (
3
)
2
0.002
P6.5 retina
CTCACATAAC
(
3
)
18.3
0.0183
P6.5 retina
AGACTATGCA
(
2
)
3.3
0.0033
P10.5 crx- retina
AGACTATGCA
(
2
)
31.6
0.0316
P10.5 crx- retina
CTCACATAAC
(
3
)
9.3
0.0093
P10.5 crx- retina
ACCTTTTCTC
(
3
)
3.7
0.0037
P10.5 crx- retina
ACCTTTCTCA (
3
)
1.9
0.0019
P10.5 crx+ retina
AGACTATGCA
(
2
)
5.8
0.0058
P10.5 crx+ retina
CTCACATAAC
(
3
)
3.8
0.0038
P10.5 crx+ retina
ACCTTTTCTC
(
3
)
1.9
0.0019
Adult retinal
AGACTATGCA
(
2
)
9.3
0.0093
Adult retinal
CTCACATAAC
(
3
)
7.4
0.0074
Adult retinal
ACCTTTCTCA (
3
)
1.9
0.0019
ONL
ACCTTTCTCA (
3
)
3.8
0.0038
ONL
CTCACATAAC
(
3
)
3.8
0.0038
