Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.182042	Atp5h	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d	11		71679
Gene Ontology	ATP synthesis coupled proton transport | hydrogen ion transporter activity | hydrogen-transporting ATP synthase activity, rotational mechanism | hydrogen-transporting ATPase activity, rotational mechanism | mitochondrion | proton transport | proton-transporting two-sector ATPase complex
Human Homolog	ATP5H[ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 139 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAATAAAACA (10) 17.9 0.0179 P8 Cb GC AAAAATAAAA (20) 8.2 0.0082 P8 Cb GC TGGGTGCTGG (64) 8.2 0.0082 P8 Cb GC AAATTAAACA 6.5 0.0065 P8 Cb GC AAATAAAAAA (11) 3.3 0.0033 P8 Cb GC ACCCTCCCAA (2) 3.3 0.0033 P8 Cb GC TCGGCCGGGG 3.3 0.0033 P8 Cb GC CCAGGCAAGC (14) 1.6 0.0016 P8 Cb GC GGAAACAAAA (11) 1.6 0.0016 Cb medulloblastoma AAATAAAACA (10) 39.3 0.0393 Cb medulloblastoma AAAAATAAAA (20) 20.8 0.0208 Cb medulloblastoma TGGGTGCTGG (64) 9.2 0.0092 Cb medulloblastoma TCGGCCGGGG 6.9 0.0069 Cb medulloblastoma AAATAAAAAA (11) 4.6 0.0046 Cb medulloblastoma AAATTAAACA 2.3 0.0023 Cb medulloblastoma CTGGGTGATT 2.3 0.0023 Cb medulloblastoma GGAAACAAAA (11) 2.3 0.0023 P8 GC+1d culture AAATAAAACA (10) 13.7 0.0137 P8 GC+1d culture AAAAATAAAA (20) 11.4 0.0114 P8 GC+1d culture TGGGTGCTGG (64) 5.7 0.0057 P8 GC+1d culture AAATTAAACA 3.4 0.0034 P8 GC+1d culture CCCCAAAACC (2) 1.1 0.0011 P8 GC+SHH+1d culture AAATAAAACA (10) 29.3 0.0293 P8 GC+SHH+1d culture AAATAAAAAA (11) 7 0.007 P8 GC+SHH+1d culture AAAAATAAAA (20) 5.9 0.0059 P8 GC+SHH+1d culture TGGGTGCTGG (64) 3.5 0.0035 P8 GC+SHH+1d culture AAATTAAACA 2.3 0.0023 P8 GC+SHH+1d culture AAATAAAATA (4) 1.2 0.0012 P8 GC+SHH+1d culture AAATAAACAT (5) 1.2 0.0012 3T3 fibroblasts TGGGTGCTGG (64) 17.5 0.0175 3T3 fibroblasts ACCCTCCCAA (2) 7 0.007 3T3 fibroblasts CCAGGCAAGC (14) 3.5 0.0035 E15 cortex TGGGTGCTGG (64) 14.8 0.0148 E15 cortex AAATAAAACA (10) 4.9 0.0049 P1 cortex TGGGTGCTGG (64) 13.6 0.0136 P1 cortex AAATAAAACA (10) 9.1 0.0091 P1 cortex AAAAATAAAA (20) 4.5 0.0045 P1 cortex AAATAAAAAA (11) 4.5 0.0045 P1 cortex AAATAAAAAC (10) 4.5 0.0045 P1 cortex CTGGGTGATT 4.5 0.0045 P1 cortex GGAAACAAAA (11) 4.5 0.0045 Hypothalamus AAATAAAACA (10) 48.9 0.0489 Hypothalamus AAAAATAAAA (20) 14.5 0.0145 Hypothalamus TCGGCCGGGG 12.7 0.0127 Hypothalamus TGGGTGCTGG (64) 9.1 0.0091 Hypothalamus AAATAAAAAA (11) 7.2 0.0072 Hypothalamus CCCCAAAACC (2) 3.6 0.0036 Hypothalamus AAATAAAATA (4) 1.8 0.0018 Hypothalamus ACCCTCCCAA (2) 1.8 0.0018 E12.5 retina AAATAAAACA (10) 24.4 0.0244 E12.5 retina TGGGTGCTGG (64) 9.4 0.0094 E12.5 retina AAATAAACAT (5) 3.8 0.0038 E12.5 retina AAAAATAAAA (20) 1.9 0.0019 E12.5 retina AAATAAAAAA (11) 1.9 0.0019 E12.5 retina AAATAAAAAC (10) 1.9 0.0019 E12.5 retina AAATTAAACA 1.9 0.0019 E12.5 retina CCAGGCAAGC (14) 1.9 0.0019 E12.5 retina CTGGGTGATT 1.9 0.0019 E14.5 retina TGGGTGCTGG (64) 54.7 0.0547 E14.5 retina AAATAAAACA (10) 34.6 0.0346 E14.5 retina AAAAATAAAA (20) 16.4 0.0164 E14.5 retina AAATAAAAAA (11) 5.5 0.0055 E14.5 retina TCGGCCGGGG 5.5 0.0055 E14.5 retina AAATAAAATA (4) 1.8 0.0018 E14.5 retina AAATAAACAT (5) 1.8 0.0018 E14.5 retina GACACACAGG (2) 1.8 0.0018 E16.5 retina TGGGTGCTGG (64) 41.7 0.0417 E16.5 retina AAATAAAACA (10) 29 0.029 E16.5 retina AAAAATAAAA (20) 9.1 0.0091 E16.5 retina TCGGCCGGGG 9.1 0.0091 E16.5 retina CCCCAAAACC (2) 7.2 0.0072 E16.5 retina AAATAAAAAA (11) 1.8 0.0018 E16.5 retina AAATAAAATA (4) 1.8 0.0018 E16.5 retina CTGGGTGATT 1.8 0.0018 E16.5 retina GACACACAGG (2) 1.8 0.0018 E16.5 retina GGAAACAAAA (11) 1.8 0.0018 E18.5 retina AAATAAAACA (10) 52.8 0.0528 E18.5 retina TGGGTGCTGG (64) 20 0.02 E18.5 retina AAATAAAAAA (11) 9.1 0.0091 E18.5 retina AAAAATAAAA (20) 7.3 0.0073 E18.5 retina GAAATAAAAC (4) 3.6 0.0036 E18.5 retina GGAAACAAAA (11) 3.6 0.0036 E18.5 retina ATATAAAACA (4) 1.8 0.0018 E18.5 retina TCGGCCGGGG 1.8 0.0018 P0.5 retina TGGGTGCTGG (64) 11.8 0.0118 P0.5 retina AAATAAAACA (10) 7.9 0.0079 P0.5 retina AAAAATAAAA (20) 3.9 0.0039 P0.5 retina AAATAAAATA (4) 2 0.002 P0.5 retina GACACACAGG (2) 2 0.002 P0.5 retina TCGGCCGGGG 2 0.002 P2.5 retina TGGGTGCTGG (64) 17.6 0.0176 P2.5 retina AAATAAAACA (10) 15.8 0.0158 P2.5 retina AAATAAAAAA (11) 5.3 0.0053 P2.5 retina AAATTAAACA 3.5 0.0035 P2.5 retina CTGGGTGATT 3.5 0.0035 P2.5 retina AAAAATAAAA (20) 1.8 0.0018 P2.5 retina AAATAAAAAC (10) 1.8 0.0018 P2.5 retina CCAGGCAAGC (14) 1.8 0.0018 P2.5 retina TCGGCCGGGG 1.8 0.0018 P4.5 retina AAATAAAACA (10) 25.8 0.0258 P4.5 retina TGGGTGCTGG (64) 9.9 0.0099 P4.5 retina AAAAATAAAA (20) 5.9 0.0059 P4.5 retina AAATAAAAAA (11) 5.9 0.0059 P4.5 retina AAATTAAACA 4 0.004 P4.5 retina TCGGCCGGGG 2 0.002 P6.5 retina AAATAAAACA (10) 41.7 0.0417 P6.5 retina AAAAATAAAA (20) 13.3 0.0133 P6.5 retina TGGGTGCTGG (64) 13.3 0.0133 P6.5 retina AAATAAAAAA (11) 8.3 0.0083 P6.5 retina AAATTAAACA 1.7 0.0017 P10.5 crx- retina AAATAAAACA (10) 26 0.026 P10.5 crx- retina TGGGTGCTGG (64) 20.4 0.0204 P10.5 crx- retina AAATAAAAAA (11) 3.7 0.0037 P10.5 crx- retina CCCCAAAACC (2) 3.7 0.0037 P10.5 crx- retina AAAAATAAAA (20) 1.9 0.0019 P10.5 crx- retina AAATTAAACA 1.9 0.0019 P10.5 crx- retina TCGGCCGGGG 1.9 0.0019 P10.5 crx+ retina AAATAAAACA (10) 21.1 0.0211 P10.5 crx+ retina TGGGTGCTGG (64) 15.4 0.0154 P10.5 crx+ retina AAAAATAAAA (20) 3.8 0.0038 P10.5 crx+ retina AAATAAAAAA (11) 1.9 0.0019 P10.5 crx+ retina AAATAAAAAC (10) 1.9 0.0019 P10.5 crx+ retina AAATAAAATA (4) 1.9 0.0019 P10.5 crx+ retina ATATAAAACA (4) 1.9 0.0019 P10.5 crx+ retina CCCCAAAACC (2) 1.9 0.0019 Adult retinal TGGGTGCTGG (64) 13 0.013 Adult retinal AAATAAAACA (10) 3.7 0.0037 Adult retinal TCGGCCGGGG 3.7 0.0037 Adult retinal AAAAATAAAA (20) 1.9 0.0019 Adult retinal AAATAAAAAA (11) 1.9 0.0019 Adult retinal AAATTAAACA 1.9 0.0019 Adult retinal ATATAAAACA (4) 1.9 0.0019 ONL TGGGTGCTGG (64) 40.2 0.0402 ONL AAATAAAACA (10) 32.6 0.0326 ONL AAATTAAACA 7.7 0.0077 ONL AAATAAAAAA (11) 3.8 0.0038 ONL ACCCTCCCAA (2) 1.9 0.0019 ONL ATATAAAACA (4) 1.9 0.0019 ONL CTGGGTGATT 1.9 0.0019