Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.184012	Trim9	tripartite motif protein 9	12		94090
Gene Ontology	cytoplasm | intracellular | protein binding | protein binding | protein ubiquitination | synaptic vesicle exocytosis | synaptosome | ubiquitin ligase complex | ubiquitin-protein ligase activity | zinc ion binding
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 84 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGAATAAAG (2) 3.3 0.0033 P8 Cb GC ACAGTGCAAT (2) 1.6 0.0016 P8 Cb GC GCCTCTCAGC (2) 1.6 0.0016 P8 Cb GC GCTGGGCCGC 1.6 0.0016 P8 Cb GC GGAAGGTGTC (2) 1.6 0.0016 P8 Cb GC TACACACACA (29) 1.6 0.0016 Cb medulloblastoma GCTGGGCCGC 16.2 0.0162 Cb medulloblastoma ATGAAATAAA (5) 11.6 0.0116 Cb medulloblastoma ACAGTGCAAT (2) 2.3 0.0023 Cb medulloblastoma GCCTCTCAGC (2) 2.3 0.0023 Cb medulloblastoma GTGCAGACCC (5) 2.3 0.0023 Cb medulloblastoma TACACACACA (29) 2.3 0.0023 P8 GC+1d culture GGAAGGTGTC (2) 3.4 0.0034 P8 GC+1d culture ACAGTGCAAT (2) 2.3 0.0023 P8 GC+1d culture ATGAAATAAA (5) 1.1 0.0011 P8 GC+1d culture GCCTCTCAGC (2) 1.1 0.0011 P8 GC+SHH+1d culture ACAGTGCAAT (2) 2.3 0.0023 P8 GC+SHH+1d culture ATGAAATAAA (5) 2.3 0.0023 P8 GC+SHH+1d culture ATGAATAAAG (2) 2.3 0.0023 P8 GC+SHH+1d culture TTTGTGTCTG (5) 1.2 0.0012 3T3 fibroblasts GCCTCTCAGC (2) 7 0.007 3T3 fibroblasts GGAAGGTGTC (2) 7 0.007 3T3 fibroblasts GTGCAGACCC (5) 3.5 0.0035 E15 cortex GCTGGGCCGC 14.8 0.0148 E15 cortex TTTGTGTCTG (5) 4.9 0.0049 P1 cortex ACAGTGCAAT (2) 4.5 0.0045 P1 cortex GCTGGGCCGC 4.5 0.0045 Hypothalamus TACACACACA (29) 7.2 0.0072 Hypothalamus ATGAAATAAA (5) 5.4 0.0054 Hypothalamus ACAGTGCAAT (2) 3.6 0.0036 Hypothalamus GCTGGGCCGC 3.6 0.0036 E12.5 retina GAAGAGATGG (7) 5.6 0.0056 E12.5 retina ACAGTGCAAT (2) 1.9 0.0019 E12.5 retina GGAAGGTGTC (2) 1.9 0.0019 E12.5 retina TACACACACA (29) 1.9 0.0019 E14.5 retina TACACACACA (29) 5.5 0.0055 E14.5 retina ACAGTGCAAT (2) 3.6 0.0036 E14.5 retina ATGAAATAAA (5) 3.6 0.0036 E14.5 retina ATGAATAAAG (2) 1.8 0.0018 E14.5 retina GATTCTCATT (2) 1.8 0.0018 E14.5 retina GCCTCTCAGC (2) 1.8 0.0018 E16.5 retina ACAGTGCAAT (2) 5.4 0.0054 E16.5 retina TACACACACA (29) 3.6 0.0036 E16.5 retina ATGAAATAAA (5) 1.8 0.0018 E18.5 retina ATGAATAAAG (2) 5.5 0.0055 E18.5 retina ACAGTGCAAT (2) 3.6 0.0036 E18.5 retina GCTGGGCCGC 3.6 0.0036 E18.5 retina TTTGTGTCTG (5) 3.6 0.0036 E18.5 retina GCCTCTCAGC (2) 1.8 0.0018 E18.5 retina TACACACACA (29) 1.8 0.0018 P0.5 retina TACACACACA (29) 5.9 0.0059 P0.5 retina GTGCAGACCC (5) 3.9 0.0039 P0.5 retina TTTGTGTCTG (5) 3.9 0.0039 P0.5 retina TTTTGGTGAC 3.9 0.0039 P0.5 retina GCCTCTCAGC (2) 2 0.002 P0.5 retina GCTGGGCCGC 2 0.002 P2.5 retina ATGAAATAAA (5) 3.5 0.0035 P2.5 retina ATGAATAAAG (2) 1.8 0.0018 P2.5 retina GCTGGGCCGC 1.8 0.0018 P4.5 retina GCTGGGCCGC 11.9 0.0119 P4.5 retina ACAGTGCAAT (2) 4 0.004 P4.5 retina ATGAAATAAA (5) 4 0.004 P4.5 retina TACACACACA (29) 4 0.004 P4.5 retina ATGAATAAAG (2) 2 0.002 P4.5 retina TTTGTGTCTG (5) 2 0.002 P6.5 retina ATGAAATAAA (5) 3.3 0.0033 P6.5 retina GCTGGGCCGC 3.3 0.0033 P6.5 retina TACACACACA (29) 3.3 0.0033 P10.5 crx- retina GCTGGGCCGC 9.3 0.0093 P10.5 crx- retina GATTCTCATT (2) 3.7 0.0037 P10.5 crx- retina TACACACACA (29) 3.7 0.0037 P10.5 crx- retina GGAAGGTGTC (2) 1.9 0.0019 P10.5 crx- retina TTTGTGTCTG (5) 1.9 0.0019 P10.5 crx+ retina GCTGGGCCGC 7.7 0.0077 P10.5 crx+ retina GCCTCTCAGC (2) 3.8 0.0038 P10.5 crx+ retina ACAGTGCAAT (2) 1.9 0.0019 P10.5 crx+ retina ATGAAATAAA (5) 1.9 0.0019 P10.5 crx+ retina TACACACACA (29) 1.9 0.0019 Adult retinal TACACACACA (29) 5.6 0.0056 Adult retinal GCTGGGCCGC 3.7 0.0037 ONL TACACACACA (29) 13.4 0.0134 ONL ACAGTGCAAT (2) 9.6 0.0096 ONL GCCTCTCAGC (2) 1.9 0.0019 ONL TTTTGGTGAC 1.9 0.0019