Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.18472	Psmc6	proteasome (prosome, macropain) 26S subunit, ATPase, 6	14		67089
Gene Ontology	ATP binding | ATPase activity | cytoplasm | cytosol | hydrolase activity | nucleotide binding | nucleus | proteasome complex (sensu Eukarya) | protein catabolism
Human Homolog	PSMC6[proteasome (prosome, macropain) 26S subunit, ATPase, 6]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 108 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TATAAGCAAC 13.1 0.0131 P8 Cb GC TATAAGCAAA (4) 4.9 0.0049 P8 Cb GC AACAGACTTT (4) 3.3 0.0033 P8 Cb GC TGGCAATCAA 3.3 0.0033 P8 Cb GC ACAGACATTG (4) 1.6 0.0016 P8 Cb GC TTTGGTGATG 1.6 0.0016 Cb medulloblastoma TGGCAATCAA 11.6 0.0116 Cb medulloblastoma AACAGACTTT (4) 2.3 0.0023 Cb medulloblastoma ACAGACATTG (4) 2.3 0.0023 Cb medulloblastoma TAATTTTCCA (2) 2.3 0.0023 Cb medulloblastoma TATAAGCAAC 2.3 0.0023 Cb medulloblastoma TTTGGTGATG 2.3 0.0023 P8 GC+1d culture TTTGGTGATG 10.3 0.0103 P8 GC+1d culture TGGCAATCAA 8 0.008 P8 GC+1d culture TATAAGCAAC 4.6 0.0046 P8 GC+1d culture TCTCACAAGG (2) 2.3 0.0023 P8 GC+1d culture ACAGACATTT (6) 1.1 0.0011 P8 GC+SHH+1d culture TGGCAATCAA 4.7 0.0047 P8 GC+SHH+1d culture TATAAGCAAA (4) 3.5 0.0035 P8 GC+SHH+1d culture TATAAGCAAC 3.5 0.0035 P8 GC+SHH+1d culture GTCCAGCACA (2) 2.3 0.0023 P8 GC+SHH+1d culture ACAGACATTG (4) 1.2 0.0012 P8 GC+SHH+1d culture TAGCTCAATG (3) 1.2 0.0012 P8 GC+SHH+1d culture TCTCACAAGG (2) 1.2 0.0012 P8 GC+SHH+1d culture TTTGGTGATG 1.2 0.0012 3T3 fibroblasts TGGCAATCAA 3.5 0.0035 E15 cortex TGGCAATCAA 9.9 0.0099 E15 cortex ACAGACATTG (4) 4.9 0.0049 P1 cortex TAATTTTCCA (2) 9.1 0.0091 P1 cortex AACAGACTTT (4) 4.5 0.0045 P1 cortex TGGCAATCAA 4.5 0.0045 Hypothalamus TAATTTTCCA (2) 36.2 0.0362 Hypothalamus TATAAGCAAC 7.2 0.0072 Hypothalamus TGGCAATCAA 7.2 0.0072 Hypothalamus AACAGACTTT (4) 3.6 0.0036 Hypothalamus TATAAGCAAA (4) 3.6 0.0036 Hypothalamus ACAGACATTT (6) 1.8 0.0018 Hypothalamus GCGGACCCTA (2) 1.8 0.0018 E12.5 retina TATAAGCAAA (4) 5.6 0.0056 E12.5 retina TATAAGCAAC 5.6 0.0056 E12.5 retina ACAGACATTT (6) 3.8 0.0038 E12.5 retina TTTGGTGATG 3.8 0.0038 E12.5 retina TGGCAATCAA 1.9 0.0019 E14.5 retina TATAAGCAAA (4) 5.5 0.0055 E14.5 retina TATAAGCAAC 5.5 0.0055 E14.5 retina ACAGACATTT (6) 3.6 0.0036 E14.5 retina TGGCAATCAA 3.6 0.0036 E14.5 retina TTTGGTGATG 3.6 0.0036 E14.5 retina AACAGACTTT (4) 1.8 0.0018 E14.5 retina ACAGACATTG (4) 1.8 0.0018 E16.5 retina TGGCAATCAA 7.2 0.0072 E16.5 retina TATAAGCAAC 5.4 0.0054 E16.5 retina TCTCACAAGG (2) 3.6 0.0036 E16.5 retina AACAGACTTT (4) 1.8 0.0018 E16.5 retina ACAGACATTG (4) 1.8 0.0018 E16.5 retina ACAGACATTT (6) 1.8 0.0018 E16.5 retina TATAAGCAAA (4) 1.8 0.0018 E16.5 retina TTTGGTGATG 1.8 0.0018 E18.5 retina TATAAGCAAC 12.7 0.0127 E18.5 retina TGGCAATCAA 9.1 0.0091 E18.5 retina TTTGGTGATG 9.1 0.0091 E18.5 retina TATAAGCAAA (4) 5.5 0.0055 E18.5 retina ACAGACATTT (6) 1.8 0.0018 E18.5 retina TCTCACAAGG (2) 1.8 0.0018 P0.5 retina TATAAGCAAA (4) 3.9 0.0039 P0.5 retina TGGCAATCAA 3.9 0.0039 P0.5 retina TTTGGTGATG 3.9 0.0039 P0.5 retina TAATTTTCCA (2) 2 0.002 P0.5 retina TCTCACAAGG (2) 2 0.002 P2.5 retina TGGCAATCAA 7 0.007 P2.5 retina TTTGGTGATG 7 0.007 P2.5 retina ACAGACATTG (4) 3.5 0.0035 P2.5 retina TATAAGCAAA (4) 3.5 0.0035 P2.5 retina TATAAGCAAC 1.8 0.0018 P4.5 retina TATAAGCAAC 9.9 0.0099 P4.5 retina TATAAGCAAA (4) 5.9 0.0059 P4.5 retina TGGCAATCAA 4 0.004 P4.5 retina TAATTTTCCA (2) 2 0.002 P4.5 retina TTTGGTGATG 2 0.002 P6.5 retina TGGCAATCAA 8.3 0.0083 P6.5 retina TATAAGCAAC 5 0.005 P6.5 retina TCTCACAAGG (2) 3.3 0.0033 P6.5 retina TTTGGTGATG 3.3 0.0033 P6.5 retina AACAGACTTT (4) 1.7 0.0017 P10.5 crx- retina GCGGACCCTA (2) 3.7 0.0037 P10.5 crx- retina TATAAGCAAC 3.7 0.0037 P10.5 crx- retina TTTGGTGATG 3.7 0.0037 P10.5 crx- retina AACAGACTTT (4) 1.9 0.0019 P10.5 crx- retina TAATTTTCCA (2) 1.9 0.0019 P10.5 crx- retina TCTCACAAGG (2) 1.9 0.0019 P10.5 crx+ retina TGGCAATCAA 9.6 0.0096 P10.5 crx+ retina TCTCACAAGG (2) 5.8 0.0058 P10.5 crx+ retina AACAGACTTT (4) 1.9 0.0019 P10.5 crx+ retina TAATTTTCCA (2) 1.9 0.0019 P10.5 crx+ retina TAGCTCAATG (3) 1.9 0.0019 P10.5 crx+ retina TATAAGCAAA (4) 1.9 0.0019 P10.5 crx+ retina TTTGGTGATG 1.9 0.0019 Adult retinal TTTGGTGATG 5.6 0.0056 Adult retinal TAATTTTCCA (2) 3.7 0.0037 Adult retinal TGGCAATCAA 3.7 0.0037 Adult retinal ACAGACATTG (4) 1.9 0.0019 Adult retinal GTCCAGCACA (2) 1.9 0.0019 Adult retinal TAGCTCAATG (3) 1.9 0.0019 Adult retinal TATAAGCAAA (4) 1.9 0.0019 Adult retinal TCTCACAAGG (2) 1.9 0.0019 ONL TATAAGCAAC 3.8 0.0038 ONL TCTCACAAGG (2) 3.8 0.0038 ONL TTTGGTGATG 1.9 0.0019