Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.19133	Aplp2	amyloid beta (A4) precursor-like protein 2	9	9 13.0 cM	11804
Gene Ontology	binding | DNA binding | extracellular space | integral to membrane | nucleus | protein binding
Human Homolog	APLP2[amyloid beta (A4) precursor-like protein 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 119 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAATTGGATC (2) 3.3 0.0033 P8 Cb GC CAAAGTAACT (2) 1.6 0.0016 P8 Cb GC CAGGAGAGAT (3) 1.6 0.0016 P8 Cb GC GCACCGAGTA 1.6 0.0016 P8 Cb GC GGACTTTATT 1.6 0.0016 Cb medulloblastoma AAATTGGATC (2) 6.9 0.0069 Cb medulloblastoma TTTGTTTTAT (4) 4.6 0.0046 Cb medulloblastoma TCTGACTGAG (2) 2.3 0.0023 P8 GC+1d culture GAGGGAGCCA (6) 5.7 0.0057 P8 GC+1d culture AAATTGGATC (2) 4.6 0.0046 P8 GC+1d culture CACTGACCCT (3) 2.3 0.0023 P8 GC+1d culture TGTGAGACAA 2.3 0.0023 P8 GC+1d culture ATTCTGAAAA (4) 1.1 0.0011 P8 GC+1d culture CACAACCCAG (2) 1.1 0.0011 P8 GC+1d culture GAGGGAGCCC (10) 1.1 0.0011 P8 GC+SHH+1d culture AAATTGGATC (2) 5.9 0.0059 P8 GC+SHH+1d culture AAAGTCGATG (3) 1.2 0.0012 P8 GC+SHH+1d culture CAAAGTAACT (2) 1.2 0.0012 P8 GC+SHH+1d culture CTGCTGCCCT (16) 1.2 0.0012 P8 GC+SHH+1d culture TGTGAGACAA 1.2 0.0012 P8 GC+SHH+1d culture TTTGTTTTAT (4) 1.2 0.0012 3T3 fibroblasts AAATTGGATC (2) 3.5 0.0035 3T3 fibroblasts ATTTGATGTG (5) 3.5 0.0035 E15 cortex AAAGTCGATG (3) 4.9 0.0049 E15 cortex AAATTGGATC (2) 4.9 0.0049 E15 cortex CTGCTGCCCT (16) 4.9 0.0049 P1 cortex AAATTGGATC (2) 4.5 0.0045 P1 cortex CTGCTGCCCT (16) 4.5 0.0045 Hypothalamus AAATTGGATC (2) 5.4 0.0054 Hypothalamus CAGGAGAGAT (3) 3.6 0.0036 Hypothalamus ATTCTGAAAA (4) 1.8 0.0018 Hypothalamus GAGGGAGCCA (6) 1.8 0.0018 Hypothalamus GCTGAGGACC (4) 1.8 0.0018 Hypothalamus TTTGTTTTAT (4) 1.8 0.0018 E12.5 retina AAATTGGATC (2) 5.6 0.0056 E12.5 retina TGATTGAGGA (2) 3.8 0.0038 E12.5 retina CAGGAGAGAT (3) 1.9 0.0019 E12.5 retina CTGCTGCCCT (16) 1.9 0.0019 E12.5 retina GAGGGAGCCC (10) 1.9 0.0019 E12.5 retina GTATTCTCTG (2) 1.9 0.0019 E12.5 retina GTTCTGCATC (2) 1.9 0.0019 E12.5 retina TCTGACTGAG (2) 1.9 0.0019 E12.5 retina TGAAAATTCA 1.9 0.0019 E14.5 retina CTGCTGCCCT (16) 3.6 0.0036 E14.5 retina ATTTGATGTG (5) 1.8 0.0018 E14.5 retina CAAAGTAACT (2) 1.8 0.0018 E14.5 retina GAGGGAGCCA (6) 1.8 0.0018 E14.5 retina TTTGTTTTAT (4) 1.8 0.0018 E16.5 retina AAATTGGATC (2) 5.4 0.0054 E16.5 retina CTGCTGCCCT (16) 5.4 0.0054 E16.5 retina CAAAGTAACT (2) 1.8 0.0018 E16.5 retina GAGGGAGCCA (6) 1.8 0.0018 E16.5 retina GTTCTGCATC (2) 1.8 0.0018 E16.5 retina TCTGACTGAG (2) 1.8 0.0018 E16.5 retina TTTGTTTTAT (4) 1.8 0.0018 E18.5 retina TTTGTTTTAT (4) 3.6 0.0036 E18.5 retina AAATTGGATC (2) 1.8 0.0018 E18.5 retina ATTTGATGTG (5) 1.8 0.0018 E18.5 retina CAAAGTAACT (2) 1.8 0.0018 E18.5 retina GGACTTTATT 1.8 0.0018 P0.5 retina AAATTGGATC (2) 3.9 0.0039 P0.5 retina GGACTTTATT 3.9 0.0039 P0.5 retina ATTTGATGTG (5) 2 0.002 P0.5 retina CTCTATATAA 2 0.002 P0.5 retina CTGCTGCCCT (16) 2 0.002 P0.5 retina GAGGGAGCCA (6) 2 0.002 P0.5 retina GAGGGAGCCC (10) 2 0.002 P0.5 retina GTATTCTCTG (2) 2 0.002 P0.5 retina TCTGACTGAG (2) 2 0.002 P2.5 retina GAGGGAGCCC (10) 3.5 0.0035 P2.5 retina AAAGTCGATG (3) 1.8 0.0018 P2.5 retina AAATTGGATC (2) 1.8 0.0018 P2.5 retina TCTGACTGAG (2) 1.8 0.0018 P2.5 retina TGTGAGACAA 1.8 0.0018 P4.5 retina AAATTGGATC (2) 4 0.004 P4.5 retina CAAAGTAACT (2) 2 0.002 P4.5 retina CAGGAGAGAT (3) 2 0.002 P4.5 retina CTGCTGCCCT (16) 2 0.002 P4.5 retina GAGGGAGCCA (6) 2 0.002 P4.5 retina TGAAAATTCA 2 0.002 P6.5 retina AAATTGGATC (2) 10 0.01 P6.5 retina AAAGTCGATG (3) 3.3 0.0033 P6.5 retina ATTTGATGTG (5) 3.3 0.0033 P6.5 retina CTCTATATAA 3.3 0.0033 P6.5 retina CAGGAGAGAT (3) 1.7 0.0017 P6.5 retina GAGGGAGCCA (6) 1.7 0.0017 P6.5 retina GAGGGAGCCC (10) 1.7 0.0017 P6.5 retina TGTGAGACAA 1.7 0.0017 P10.5 crx- retina AAATTGGATC (2) 16.7 0.0167 P10.5 crx- retina AAAGTCGATG (3) 3.7 0.0037 P10.5 crx- retina CAAAGTAACT (2) 1.9 0.0019 P10.5 crx- retina CACAACCCAG (2) 1.9 0.0019 P10.5 crx- retina CTGCTGCCCT (16) 1.9 0.0019 P10.5 crx+ retina AAATTGGATC (2) 13.5 0.0135 P10.5 crx+ retina ATTTGATGTG (5) 1.9 0.0019 P10.5 crx+ retina CACAACCCAG (2) 1.9 0.0019 P10.5 crx+ retina CACTGACCCT (3) 1.9 0.0019 P10.5 crx+ retina GAGGGAGCCA (6) 1.9 0.0019 P10.5 crx+ retina GCTGAGGACC (4) 1.9 0.0019 P10.5 crx+ retina TGAAAATTCA 1.9 0.0019 P10.5 crx+ retina TGATTGAGGA (2) 1.9 0.0019 P10.5 crx+ retina TTTGTTTTAT (4) 1.9 0.0019 Adult retinal AAATTGGATC (2) 7.4 0.0074 Adult retinal GAGGGAGCCA (6) 3.7 0.0037 Adult retinal TGTGAGACAA 3.7 0.0037 Adult retinal ATTCTGAAAA (4) 1.9 0.0019 Adult retinal ATTTGATGTG (5) 1.9 0.0019 Adult retinal CTGCTGCCCT (16) 1.9 0.0019 Adult retinal GCTGAGGACC (4) 1.9 0.0019 Adult retinal GTATTCTCTG (2) 1.9 0.0019 ONL AAATTGGATC (2) 9.6 0.0096 ONL GAGGGAGCCA (6) 3.8 0.0038 ONL AAAGTCGATG (3) 1.9 0.0019 ONL ATTTGATGTG (5) 1.9 0.0019 ONL CACAACCCAG (2) 1.9 0.0019 ONL GCTGAGGACC (4) 1.9 0.0019 ONL GTTCTGCATC (2) 1.9 0.0019 ONL TGAAAATTCA 1.9 0.0019 ONL TGATTGAGGA (2) 1.9 0.0019