Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.19142	Capza1	capping protein (actin filament) muscle Z-line, alpha 1	3	3 55.0 cM	12340
Gene Ontology	actin binding | actin cytoskeleton organization and biogenesis | F-actin capping protein complex
Human Homolog	CAPZA1[capping protein (actin filament) muscle Z-line, alpha 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 105 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC CCACACTGTC 16.3 0.0163 P8 Cb GC GAAAGAAAGG (4) 4.9 0.0049 P8 Cb GC CCACACTGTT (2) 1.6 0.0016 P8 Cb GC GATGGATAGT (2) 1.6 0.0016 P8 Cb GC TGTAACTGTG (4) 1.6 0.0016 P8 Cb GC TTTAACTATA (2) 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma CCACACTGTC 9.2 0.0092 Cb medulloblastoma TTTAACTATA (2) 2.3 0.0023 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture CCACACTGTC 11.4 0.0114 P8 GC+1d culture TTTAACTATA (2) 4.6 0.0046 P8 GC+1d culture GATGGATAGT (2) 3.4 0.0034 P8 GC+1d culture TCTTTAATCC (30) 2.3 0.0023 P8 GC+1d culture TGTAACTGTG (4) 2.3 0.0023 P8 GC+1d culture GAAAGAAAGG (4) 1.1 0.0011 P8 GC+1d culture GAATACTGTT 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture CCACACTGTC 15.2 0.0152 P8 GC+SHH+1d culture TTTAACTATA (2) 5.9 0.0059 P8 GC+SHH+1d culture TCTTTAATCC (30) 4.7 0.0047 P8 GC+SHH+1d culture GAAAGAAAGG (4) 3.5 0.0035 P8 GC+SHH+1d culture TGTAACTGTG (4) 2.3 0.0023 P8 GC+SHH+1d culture GAAAGAAAAG (4) 1.2 0.0012 P8 GC+SHH+1d culture GAATACTGTT 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts CCACACTGTC 17.5 0.0175 3T3 fibroblasts TCTTTAATCC (30) 7 0.007 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex CCACACTGTC 9.9 0.0099 E15 cortex TCTTTAATCC (30) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex TTTAACTATA (2) 13.6 0.0136 P1 cortex TCTTTAATCC (30) 9.1 0.0091 P1 cortex GAAAGAAAGG (4) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus CCACACTGTC 10.9 0.0109 Hypothalamus CCACACTGTT (2) 1.8 0.0018 Hypothalamus GATGGATAGT (2) 1.8 0.0018 Hypothalamus TTTAACTATA (2) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina CCACACTGTC 16.9 0.0169 E12.5 retina TGTAACTGTG (4) 3.8 0.0038 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina TCTTTAATCC (30) 21.9 0.0219 E14.5 retina CCACACTGTC 12.8 0.0128 E14.5 retina TGTAACTGTG (4) 5.5 0.0055 E14.5 retina TTGGGAGGCA (3) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina CCACACTGTC 10.9 0.0109 E16.5 retina TCTTTAATCC (30) 9.1 0.0091 E16.5 retina AGTTCTAGGC 1.8 0.0018 E16.5 retina CCACACTGTT (2) 1.8 0.0018 E16.5 retina TTCTGAGCAA (3) 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina CCACACTGTC 18.2 0.0182 E18.5 retina TCTTTAATCC (30) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina AGTTCTAGGC 2 0.002 P0.5 retina CCACACTGTC 2 0.002 P0.5 retina CCACACTGTT (2) 2 0.002 P0.5 retina GAATACTGTT 2 0.002 P0.5 retina TCTTTAATCC (30) 2 0.002 P0.5 retina TTGGGAGGCA (3) 2 0.002 P0.5 retina TTTAACTATA (2) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina CCACACTGTC 12.3 0.0123 P2.5 retina TCTTTAATCC (30) 1.8 0.0018 P2.5 retina TTGGGAGGCA (3) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina CCACACTGTC 9.9 0.0099 P4.5 retina TCTTTAATCC (30) 9.9 0.0099 P4.5 retina GAAAGAAAGG (4) 2 0.002 P4.5 retina GATGGATAGT (2) 2 0.002 P4.5 retina TTTAACTATA (2) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina CCACACTGTC 10 0.01 P6.5 retina GATGGATAGT (2) 5 0.005 P6.5 retina TTTAACTATA (2) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina CCACACTGTC 14.9 0.0149 P10.5 crx- retina GATGGATAGT (2) 1.9 0.0019 P10.5 crx- retina TCTTTAATCC (30) 1.9 0.0019 P10.5 crx- retina TGTAACTGTG (4) 1.9 0.0019 P10.5 crx- retina TTCTGAGCAA (3) 1.9 0.0019 P10.5 crx- retina TTTAACTATA (2) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina CCACACTGTC 11.5 0.0115 P10.5 crx+ retina TTTAACTATA (2) 3.8 0.0038 P10.5 crx+ retina AGTTCTAGGC 1.9 0.0019 P10.5 crx+ retina GATGGATAGT (2) 1.9 0.0019 P10.5 crx+ retina TCTTTAATCC (30) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal CCACACTGTC 11.1 0.0111 Adult retinal TCTTTAATCC (30) 7.4 0.0074 Adult retinal GAATACTGTT 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL TCTTTAATCC (30) 13.4 0.0134 ONL TTTAACTATA (2) 7.7 0.0077 ONL CCACACTGTC 5.7 0.0057 ONL AGTTCTAGGC 1.9 0.0019 ONL GAAAGAAAAG (4) 1.9 0.0019 ONL TTCTGAGCAA (3) 1.9 0.0019 ONL TTGGGAGGCA (3) 1.9 0.0019