Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.19187
Ptma
prothymosin alpha
1
19231
Gene Ontology
nucleus
Human Homolog
PTMA[prothymosin, alpha (gene sequence 28)]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 259 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TTCATTATAA
110.9
0.1109
P8 Cb GC
GTCACACCAC
(
2
)
50.6
0.0506
P8 Cb GC
GGAGGAAAAA
(
7
)
34.3
0.0343
P8 Cb GC
AGGAAGCTGA (
6
)
27.7
0.0277
P8 Cb GC
TCAGACGCGG
(
3
)
9.8
0.0098
P8 Cb GC
GGAAAAAAAA (
69
)
8.2
0.0082
P8 Cb GC
GTTTCACACA (
4
)
8.2
0.0082
P8 Cb GC
GGGGGAGGGA (
9
)
4.9
0.0049
P8 Cb GC
CTCCGGTGGC (
3
)
1.6
0.0016
P8 Cb GC
GAATTGGGCA (
2
)
1.6
0.0016
P8 Cb GC
GAGGACAAAG (
5
)
1.6
0.0016
P8 Cb GC
GGAAGGAAAA
(
3
)
1.6
0.0016
P8 Cb GC
GGAAGGGAAA (
7
)
1.6
0.0016
P8 Cb GC
GGGAGGGAAA
(
8
)
1.6
0.0016
P8 Cb GC
GGGGAAGGAA (
7
)
1.6
0.0016
P8 Cb GC
TAGTAATTTA
1.6
0.0016
P8 Cb GC
TCATATCTGT
(
4
)
1.6
0.0016
P8 Cb GC
TTCCTTATAA
(
3
)
1.6
0.0016
Cb medulloblastoma
GGAAAAAAAA (
69
)
41.6
0.0416
Cb medulloblastoma
GGAGGAAAAA
(
7
)
6.9
0.0069
Cb medulloblastoma
GTTTCACACA (
4
)
4.6
0.0046
Cb medulloblastoma
TTCATTATAA
4.6
0.0046
Cb medulloblastoma
CAGACAAGCT (
2
)
2.3
0.0023
Cb medulloblastoma
CTCATTATAA
2.3
0.0023
Cb medulloblastoma
GGGGAAGGGA (
2
)
2.3
0.0023
Cb medulloblastoma
GTCACACCAC
(
2
)
2.3
0.0023
Cb medulloblastoma
GTCACACCCA (
3
)
2.3
0.0023
Cb medulloblastoma
TTCATAATAA
2.3
0.0023
P8 GC+1d culture
TTCATTATAA
84.5
0.0845
P8 GC+1d culture
GTCACACCAC
(
2
)
17.1
0.0171
P8 GC+1d culture
GGAGGAAAAA
(
7
)
6.8
0.0068
P8 GC+1d culture
AGGAAGCTGA (
6
)
5.7
0.0057
P8 GC+1d culture
GGAAAAAAAA (
69
)
5.7
0.0057
P8 GC+1d culture
GTCACACCCA (
3
)
5.7
0.0057
P8 GC+1d culture
GGAGGACACA
(
3
)
4.6
0.0046
P8 GC+1d culture
GGGGGAGGGA (
9
)
4.6
0.0046
P8 GC+1d culture
TCATATCTGT
(
4
)
3.4
0.0034
P8 GC+1d culture
GAGGACAAAG (
5
)
2.3
0.0023
P8 GC+1d culture
GTTTCACACA (
4
)
2.3
0.0023
P8 GC+1d culture
TTCATAATAA
2.3
0.0023
P8 GC+1d culture
CAGACAAGCT (
2
)
1.1
0.0011
P8 GC+1d culture
CCCTATTTTT (
3
)
1.1
0.0011
P8 GC+1d culture
GGAAGGAAAA
(
3
)
1.1
0.0011
P8 GC+1d culture
GGAAGGGAAA (
7
)
1.1
0.0011
P8 GC+SHH+1d culture
TTCATTATAA
112.4
0.1124
P8 GC+SHH+1d culture
GGAGGAAAAA
(
7
)
34
0.034
P8 GC+SHH+1d culture
GTCACACCAC
(
2
)
23.4
0.0234
P8 GC+SHH+1d culture
AGGAAGCTGA (
6
)
8.2
0.0082
P8 GC+SHH+1d culture
GGAAAAAAAA (
69
)
7
0.007
P8 GC+SHH+1d culture
GAGGACAAAG (
5
)
5.9
0.0059
P8 GC+SHH+1d culture
TCATATCTGT
(
4
)
5.9
0.0059
P8 GC+SHH+1d culture
GTCACACCCA (
3
)
4.7
0.0047
P8 GC+SHH+1d culture
GTTTCACACA (
4
)
4.7
0.0047
P8 GC+SHH+1d culture
CTCATTATAA
3.5
0.0035
P8 GC+SHH+1d culture
TTCATAATAA
3.5
0.0035
P8 GC+SHH+1d culture
GGAGGACACA
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
TCAGACGCGG
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
TTCCTTATAA
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
CCACCCACAG (
5
)
1.2
0.0012
P8 GC+SHH+1d culture
GGGGAGGGAA
(
8
)
1.2
0.0012
P8 GC+SHH+1d culture
GGGGGAGGGA (
9
)
1.2
0.0012
P8 GC+SHH+1d culture
TAGTAATTTA
1.2
0.0012
3T3 fibroblasts
GTCACACCAC
(
2
)
21
0.021
3T3 fibroblasts
TCAGACGCGG
(
3
)
14
0.014
3T3 fibroblasts
GTCACACCCA (
3
)
10.5
0.0105
3T3 fibroblasts
GTCATAGCTG (
590
)
10.5
0.0105
3T3 fibroblasts
GCCCACAATA (
3
)
7
0.007
3T3 fibroblasts
TTCATTATAA
7
0.007
3T3 fibroblasts
CCACCCACAG (
5
)
3.5
0.0035
3T3 fibroblasts
CTCCGGTGGC (
3
)
3.5
0.0035
3T3 fibroblasts
GGAGGAAAAA
(
7
)
3.5
0.0035
3T3 fibroblasts
GGGGGAGGGA (
9
)
3.5
0.0035
3T3 fibroblasts
GTTTCACACA (
4
)
3.5
0.0035
3T3 fibroblasts
TCATATCTGT
(
4
)
3.5
0.0035
E15 cortex
TCAGACGCGG
(
3
)
69.3
0.0693
E15 cortex
GGAGGAAAAA
(
7
)
14.8
0.0148
E15 cortex
GGGGAAGGGA (
2
)
14.8
0.0148
E15 cortex
GTCACACCAC
(
2
)
14.8
0.0148
E15 cortex
AGGAAGCTGA (
6
)
9.9
0.0099
E15 cortex
GGAAAAAAAA (
69
)
9.9
0.0099
E15 cortex
CTCCGGTGGC (
3
)
4.9
0.0049
E15 cortex
GGGGAAGGAA (
7
)
4.9
0.0049
E15 cortex
GGGGAGGGAA
(
8
)
4.9
0.0049
E15 cortex
GTCATAGCTG (
590
)
4.9
0.0049
E15 cortex
GTTTCACACA (
4
)
4.9
0.0049
E15 cortex
TCATATCTGT
(
4
)
4.9
0.0049
P1 cortex
GTCACACCAC
(
2
)
50
0.05
P1 cortex
TTCATTATAA
45.5
0.0455
P1 cortex
AGGAAGCTGA (
6
)
9.1
0.0091
P1 cortex
ACAAGTGCTT (
2
)
4.5
0.0045
P1 cortex
CCCTATTTTT (
3
)
4.5
0.0045
P1 cortex
GGAAAAAAAA (
69
)
4.5
0.0045
P1 cortex
GGAGGAAAAA
(
7
)
4.5
0.0045
P1 cortex
TCATATCTGT
(
4
)
4.5
0.0045
P1 cortex
TTCATAATAA
4.5
0.0045
Hypothalamus
GGAAAAAAAA (
69
)
14.5
0.0145
Hypothalamus
TTCATTATAA
14.5
0.0145
Hypothalamus
GAGGACAAAG (
5
)
3.6
0.0036
Hypothalamus
GGAGGAAAAA
(
7
)
3.6
0.0036
Hypothalamus
GTTTCACACA (
4
)
3.6
0.0036
Hypothalamus
TAGTAATTTA
3.6
0.0036
Hypothalamus
AGGAAGCCTG (
2
)
1.8
0.0018
Hypothalamus
CAGACAAGCT (
2
)
1.8
0.0018
E12.5 retina
TTCATTATAA
84.5
0.0845
E12.5 retina
GTCACACCAC
(
2
)
50.7
0.0507
E12.5 retina
GGAGGAAAAA
(
7
)
20.7
0.0207
E12.5 retina
GCCCACAATA (
3
)
5.6
0.0056
E12.5 retina
TCATATCTGT
(
4
)
5.6
0.0056
E12.5 retina
ACAAGTGCTT (
2
)
1.9
0.0019
E12.5 retina
CTCCGGTGGC (
3
)
1.9
0.0019
E12.5 retina
GAATTGGGCA (
2
)
1.9
0.0019
E12.5 retina
GCTCACACCA
(
4
)
1.9
0.0019
E12.5 retina
GGAAAAAAAA (
69
)
1.9
0.0019
E12.5 retina
GTCACACCCA (
3
)
1.9
0.0019
E12.5 retina
GTTTCACACA (
4
)
1.9
0.0019
E12.5 retina
TCAGACGCGG
(
3
)
1.9
0.0019
E12.5 retina
TTCCTTATAA
(
3
)
1.9
0.0019
E14.5 retina
TTCATTATAA
52.8
0.0528
E14.5 retina
GGAAAAAAAA (
69
)
10.9
0.0109
E14.5 retina
GTTTCACACA (
4
)
7.3
0.0073
E14.5 retina
GCTCACACCA
(
4
)
5.5
0.0055
E14.5 retina
GTCACACCAC
(
2
)
5.5
0.0055
E14.5 retina
CGCTCTCCAC
3.6
0.0036
E14.5 retina
AGGAAGCCTG (
2
)
1.8
0.0018
E14.5 retina
AGGAAGCTGA (
6
)
1.8
0.0018
E14.5 retina
CCACCCACAG (
5
)
1.8
0.0018
E14.5 retina
GAGGAAAAGA (
5
)
1.8
0.0018
E14.5 retina
GAGGACACAA (
4
)
1.8
0.0018
E14.5 retina
GGAGGAAAAA
(
7
)
1.8
0.0018
E14.5 retina
GGAGGACACA
(
3
)
1.8
0.0018
E14.5 retina
GGGGGAGGGA (
9
)
1.8
0.0018
E14.5 retina
TCAGACGCGG
(
3
)
1.8
0.0018
E14.5 retina
TCATATCTGT
(
4
)
1.8
0.0018
E16.5 retina
TTCATTATAA
48.9
0.0489
E16.5 retina
GGAGGAAAAA
(
7
)
7.2
0.0072
E16.5 retina
GTCACACCAC
(
2
)
5.4
0.0054
E16.5 retina
GTTTCACACA (
4
)
3.6
0.0036
E16.5 retina
TCATATCTGT
(
4
)
3.6
0.0036
E16.5 retina
AAAAGCTGTC (
3
)
1.8
0.0018
E16.5 retina
CGCTCTCCAC
1.8
0.0018
E16.5 retina
GAATTGGGCA (
2
)
1.8
0.0018
E16.5 retina
GAGGACAAAG (
5
)
1.8
0.0018
E16.5 retina
GCTCACACCA
(
4
)
1.8
0.0018
E16.5 retina
GGAAAAAAAA (
69
)
1.8
0.0018
E16.5 retina
GGGGAAGGAA (
7
)
1.8
0.0018
E16.5 retina
TCAGACGCGG
(
3
)
1.8
0.0018
E16.5 retina
TTCCTTATAA
(
3
)
1.8
0.0018
E18.5 retina
TTCATTATAA
56.4
0.0564
E18.5 retina
GTCACACCAC
(
2
)
25.5
0.0255
E18.5 retina
GGAGGAAAAA
(
7
)
21.8
0.0218
E18.5 retina
GGAAAAAAAA (
69
)
16.4
0.0164
E18.5 retina
GTTTCACACA (
4
)
7.3
0.0073
E18.5 retina
CGCTCTCCAC
3.6
0.0036
E18.5 retina
GGGGAAGGGA (
2
)
3.6
0.0036
E18.5 retina
TCAGACGCGG
(
3
)
3.6
0.0036
E18.5 retina
GAGGACAAAG (
5
)
1.8
0.0018
E18.5 retina
GCTCACACCA
(
4
)
1.8
0.0018
E18.5 retina
GGAAGGAAAA
(
3
)
1.8
0.0018
E18.5 retina
GTCACACCCA (
3
)
1.8
0.0018
P0.5 retina
TTCATTATAA
68.7
0.0687
P0.5 retina
GTCACACCAC
(
2
)
17.7
0.0177
P0.5 retina
GGAAAAAAAA (
69
)
13.7
0.0137
P0.5 retina
GTTTCACACA (
4
)
9.8
0.0098
P0.5 retina
GGAGGAAAAA
(
7
)
5.9
0.0059
P0.5 retina
GTCATAGCTG (
590
)
3.9
0.0039
P0.5 retina
TCAGACGCGG
(
3
)
3.9
0.0039
P0.5 retina
AGGAAGCCTG (
2
)
2
0.002
P0.5 retina
CGCTCTCCAC
2
0.002
P0.5 retina
GAGGACAAAG (
5
)
2
0.002
P0.5 retina
TCATATCTGT
(
4
)
2
0.002
P0.5 retina
TTCCTTATAA
(
3
)
2
0.002
P2.5 retina
TTCATTATAA
56.3
0.0563
P2.5 retina
GGAGGAAAAA
(
7
)
28.2
0.0282
P2.5 retina
GTCACACCAC
(
2
)
15.8
0.0158
P2.5 retina
GGAAAAAAAA (
69
)
7
0.007
P2.5 retina
GTTTCACACA (
4
)
7
0.007
P2.5 retina
CGCTCTCCAC
3.5
0.0035
P2.5 retina
GAGGACAAAG (
5
)
3.5
0.0035
P2.5 retina
GAGGACACAA (
4
)
3.5
0.0035
P2.5 retina
GTCACACCCA (
3
)
3.5
0.0035
P2.5 retina
AAAAGCTGTC (
3
)
1.8
0.0018
P2.5 retina
CTCATTATAA
1.8
0.0018
P2.5 retina
GAATTGGGCA (
2
)
1.8
0.0018
P2.5 retina
GGAAGGAAAA
(
3
)
1.8
0.0018
P2.5 retina
GGGAGGGAAA
(
8
)
1.8
0.0018
P2.5 retina
GTCATAGCTG (
590
)
1.8
0.0018
P2.5 retina
TCATATCTGT
(
4
)
1.8
0.0018
P2.5 retina
TTCCTTATAA
(
3
)
1.8
0.0018
P4.5 retina
TTCATTATAA
73.3
0.0733
P4.5 retina
GGAAAAAAAA (
69
)
13.9
0.0139
P4.5 retina
GGAGGAAAAA
(
7
)
7.9
0.0079
P4.5 retina
GTCACACCAC
(
2
)
7.9
0.0079
P4.5 retina
GGAAGGAAAA
(
3
)
4
0.004
P4.5 retina
GTTTCACACA (
4
)
4
0.004
P4.5 retina
TCATATCTGT
(
4
)
4
0.004
P4.5 retina
CCCTATTTTT (
3
)
2
0.002
P4.5 retina
GAGGAAAAGA (
5
)
2
0.002
P4.5 retina
GCTCACACCA
(
4
)
2
0.002
P4.5 retina
GGGGGAGGGA (
9
)
2
0.002
P4.5 retina
GTCATAGCTG (
590
)
2
0.002
P4.5 retina
TCAGACGCGG
(
3
)
2
0.002
P6.5 retina
TTCATTATAA
31.7
0.0317
P6.5 retina
GGAAAAAAAA (
69
)
13.3
0.0133
P6.5 retina
GGGGGAGGGA (
9
)
6.7
0.0067
P6.5 retina
GAGGACAAAG (
5
)
5
0.005
P6.5 retina
GGAGGAAAAA
(
7
)
5
0.005
P6.5 retina
GTCACACCAC
(
2
)
5
0.005
P6.5 retina
GTCATAGCTG (
590
)
3.3
0.0033
P6.5 retina
GTTTCACACA (
4
)
3.3
0.0033
P6.5 retina
AAAAGCTGTC (
3
)
1.7
0.0017
P6.5 retina
GGAGGACACA
(
3
)
1.7
0.0017
P6.5 retina
GGGGAAGGAA (
7
)
1.7
0.0017
P6.5 retina
GGGGAAGGGA (
2
)
1.7
0.0017
P6.5 retina
GGGGAGGGAA
(
8
)
1.7
0.0017
P6.5 retina
TCATATCTGT
(
4
)
1.7
0.0017
P10.5 crx- retina
TTCATTATAA
39
0.039
P10.5 crx- retina
GTTTCACACA (
4
)
11.1
0.0111
P10.5 crx- retina
AGGAAGCTGA (
6
)
3.7
0.0037
P10.5 crx- retina
GGAAAAAAAA (
69
)
3.7
0.0037
P10.5 crx- retina
GGAGGAAAAA
(
7
)
3.7
0.0037
P10.5 crx- retina
CCCTATTTTT (
3
)
1.9
0.0019
P10.5 crx- retina
GCTCACACCA
(
4
)
1.9
0.0019
P10.5 crx- retina
GGGGAAGGAA (
7
)
1.9
0.0019
P10.5 crx- retina
GGGGAAGGGA (
2
)
1.9
0.0019
P10.5 crx- retina
GTCACACCAC
(
2
)
1.9
0.0019
P10.5 crx- retina
TCATATCTGT
(
4
)
1.9
0.0019
P10.5 crx+ retina
GTCACACCAC
(
2
)
21.1
0.0211
P10.5 crx+ retina
GGAAAAAAAA (
69
)
15.4
0.0154
P10.5 crx+ retina
TTCATTATAA
13.5
0.0135
P10.5 crx+ retina
GGAGGAAAAA
(
7
)
7.7
0.0077
P10.5 crx+ retina
GAGGACAAAG (
5
)
5.8
0.0058
P10.5 crx+ retina
GGAAGGAAAA
(
3
)
3.8
0.0038
P10.5 crx+ retina
GTTTCACACA (
4
)
3.8
0.0038
P10.5 crx+ retina
TTCCTTATAA
(
3
)
3.8
0.0038
P10.5 crx+ retina
ACAAGTGCTT (
2
)
1.9
0.0019
P10.5 crx+ retina
CTCCGGTGGC (
3
)
1.9
0.0019
P10.5 crx+ retina
GAGGACACAA (
4
)
1.9
0.0019
P10.5 crx+ retina
GGGAGGGAAA
(
8
)
1.9
0.0019
P10.5 crx+ retina
GGGGGAGGGA (
9
)
1.9
0.0019
P10.5 crx+ retina
GTCACACCCA (
3
)
1.9
0.0019
Adult retinal
GTTTCACACA (
4
)
9.3
0.0093
Adult retinal
TTCATTATAA
7.4
0.0074
Adult retinal
GGAAAAAAAA (
69
)
5.6
0.0056
Adult retinal
CGCTCTCCAC
1.9
0.0019
Adult retinal
CTCATTATAA
1.9
0.0019
Adult retinal
CTCCGGTGGC (
3
)
1.9
0.0019
Adult retinal
GGAAGGGAAA (
7
)
1.9
0.0019
Adult retinal
GGAGGACACA
(
3
)
1.9
0.0019
Adult retinal
GTCACACCCA (
3
)
1.9
0.0019
Adult retinal
GTCATAGCTG (
590
)
1.9
0.0019
ONL
GGAAAAAAAA (
69
)
17.2
0.0172
ONL
GTTTCACACA (
4
)
13.4
0.0134
ONL
TTCATTATAA
13.4
0.0134
ONL
GGAGGAAAAA
(
7
)
9.6
0.0096
ONL
GTCATAGCTG (
590
)
5.7
0.0057
ONL
GTCACACCAC
(
2
)
3.8
0.0038
ONL
AAAAGCTGTC (
3
)
1.9
0.0019
ONL
AGGAAGCTGA (
6
)
1.9
0.0019
ONL
GAGGAAAAGA (
5
)
1.9
0.0019
