Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.193099	Fn1	fibronectin 1	1	1 36.1 cM	14268
Gene Ontology	acute-phase response | cell adhesion | cell-substrate junction assembly | extracellular | extracellular matrix | extracellular space | heparin binding | metabolism | oxidoreductase activity | protein binding | wound healing
Human Homolog	FN1[fibronectin 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 192 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC CCAACGCTTT (2) 11.4 0.0114 P8 Cb GC CAGGGTGGGG (2) 6.5 0.0065 P8 Cb GC CAAGTTGGTC (3) 4.9 0.0049 P8 Cb GC AAAGAATTCA (9) 1.6 0.0016 P8 Cb GC ACCGATGGCT (2) 1.6 0.0016 P8 Cb GC ACTAGCTTGG (4) 1.6 0.0016 P8 Cb GC CTTCACCTTC (3) 1.6 0.0016 P8 Cb GC GCCTGTGGTG (2) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma GCTGCCCTGG (12) 6.9 0.0069 Cb medulloblastoma AAAGAATTCA (9) 4.6 0.0046 Cb medulloblastoma CCAACGCTTT (2) 4.6 0.0046 Cb medulloblastoma CAAGTTGGTC (3) 2.3 0.0023 Cb medulloblastoma GGCTGTGGCT (4) 2.3 0.0023 Cb medulloblastoma TTTTTGGGGA (5) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GCCCTGGGGC (7) 10.3 0.0103 P8 GC+1d culture CCAACGCTTT (2) 6.8 0.0068 P8 GC+1d culture TTTTTGGGGA (5) 5.7 0.0057 P8 GC+1d culture CAAGTTGGTC (3) 3.4 0.0034 P8 GC+1d culture GCCTGTGGTG (2) 3.4 0.0034 P8 GC+1d culture CAGGGTGGGG (2) 2.3 0.0023 P8 GC+1d culture GCTGCCCTGG (12) 2.3 0.0023 P8 GC+1d culture TCTTTAATCC (30) 2.3 0.0023 P8 GC+1d culture AAAGAATTCA (9) 1.1 0.0011 P8 GC+1d culture ACTAGCTTGG (4) 1.1 0.0011 P8 GC+1d culture GCAGGCTGCC (3) 1.1 0.0011 P8 GC+1d culture GGCTGTGGCT (4) 1.1 0.0011 P8 GC+1d culture GGTCTCAGCC (5) 1.1 0.0011 P8 GC+1d culture TACTGAATGC (2) 1.1 0.0011 P8 GC+1d culture TTCCGGGCCT (2) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture CCAACGCTTT (2) 4.7 0.0047 P8 GC+SHH+1d culture TCTTTAATCC (30) 4.7 0.0047 P8 GC+SHH+1d culture CAGGGTGGGG (2) 2.3 0.0023 P8 GC+SHH+1d culture CTTCACCTTC (3) 2.3 0.0023 P8 GC+SHH+1d culture GCAGGCTGCC (3) 2.3 0.0023 P8 GC+SHH+1d culture GCCTGTGGTG (2) 2.3 0.0023 P8 GC+SHH+1d culture TTCCGGGCCT (2) 2.3 0.0023 P8 GC+SHH+1d culture TTTTTGGGGA (5) 2.3 0.0023 P8 GC+SHH+1d culture AAAGAATTCA (9) 1.2 0.0012 P8 GC+SHH+1d culture CAAGTTGGTC (3) 1.2 0.0012 P8 GC+SHH+1d culture GCCCTGGGGC (7) 1.2 0.0012 P8 GC+SHH+1d culture GCTGCCCTGG (12) 1.2 0.0012 P8 GC+SHH+1d culture GGCTGTGGCT (4) 1.2 0.0012 3T3 fibroblasts CCAACGCTTT (2) 45.6 0.0456 3T3 fibroblasts GCCCTGGGGC (7) 31.5 0.0315 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GGTCTCAGCC (5) 7 0.007 3T3 fibroblasts TCTTTAATCC (30) 7 0.007 3T3 fibroblasts ACCGATGGCT (2) 3.5 0.0035 3T3 fibroblasts CAAGTTGGTC (3) 3.5 0.0035 3T3 fibroblasts GCTGCCCTGG (12) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GCCTGTGGTG (2) 34.6 0.0346 E15 cortex GGTCTCAGCC (5) 14.8 0.0148 E15 cortex ACCGATGGCT (2) 4.9 0.0049 E15 cortex CAAGTTGGTC (3) 4.9 0.0049 E15 cortex CAGGGTGGGG (2) 4.9 0.0049 E15 cortex CCAACGCTTT (2) 4.9 0.0049 E15 cortex GCCCTGGGGC (7) 4.9 0.0049 E15 cortex GCTGCCCTGG (12) 4.9 0.0049 E15 cortex GTGGCCACCA 4.9 0.0049 E15 cortex TCTTTAATCC (30) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex GCCTGTGGTG (2) 27.3 0.0273 P1 cortex TCTTTAATCC (30) 9.1 0.0091 P1 cortex ACTAGCTTGG (4) 4.5 0.0045 P1 cortex GCCCTGGGGC (7) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GCCTGTGGTG (2) 14.5 0.0145 Hypothalamus GCCCTGGGGC (7) 7.2 0.0072 Hypothalamus GGAACCAACA (4) 5.4 0.0054 Hypothalamus GGTCTCAGCC (5) 5.4 0.0054 Hypothalamus TTTTTGGGGA (5) 5.4 0.0054 Hypothalamus CAGGGTGGGG (2) 3.6 0.0036 Hypothalamus CTTCACCTTC (3) 3.6 0.0036 Hypothalamus AAAGAATTCA (9) 1.8 0.0018 Hypothalamus CAAGTTGGTC (3) 1.8 0.0018 Hypothalamus GCTGCCCTGG (12) 1.8 0.0018 Hypothalamus GGCCAAAGGG (6) 1.8 0.0018 Hypothalamus TGGTCACCTG (7) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina CCAACGCTTT (2) 16.9 0.0169 E12.5 retina CAGGGTGGGG (2) 3.8 0.0038 E12.5 retina CTTCACCTTC (3) 3.8 0.0038 E12.5 retina GCCCTGGGGC (7) 3.8 0.0038 E12.5 retina AAAGAATTCA (9) 1.9 0.0019 E12.5 retina CAAGTTGGTC (3) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TCTTTAATCC (30) 21.9 0.0219 E14.5 retina CCAACGCTTT (2) 7.3 0.0073 E14.5 retina CAAGTTGGTC (3) 3.6 0.0036 E14.5 retina TGTCTCATTG (2) 3.6 0.0036 E14.5 retina ACTAGCTTGG (4) 1.8 0.0018 E14.5 retina GCCTGTGGTG (2) 1.8 0.0018 E14.5 retina GCTGCCCTGG (12) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TCTTTAATCC (30) 9.1 0.0091 E16.5 retina CCAACGCTTT (2) 5.4 0.0054 E16.5 retina GGTCTCAGCC (5) 5.4 0.0054 E16.5 retina GCCCTGGGGC (7) 1.8 0.0018 E16.5 retina GCCTGTGGTG (2) 1.8 0.0018 E16.5 retina GCTGCCCTGG (12) 1.8 0.0018 E16.5 retina GGAACCAACA (4) 1.8 0.0018 E16.5 retina TACTGAATGC (2) 1.8 0.0018 E16.5 retina TTTTTGGGGA (5) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina CCAACGCTTT (2) 7.3 0.0073 E18.5 retina AAAGAATTCA (9) 1.8 0.0018 E18.5 retina CAAGTTGGTC (3) 1.8 0.0018 E18.5 retina TCTTTAATCC (30) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina GCCCTGGGGC (7) 7.9 0.0079 P0.5 retina TTTTTGGGGA (5) 7.9 0.0079 P0.5 retina GCCTGTGGTG (2) 5.9 0.0059 P0.5 retina ACTAGCTTGG (4) 3.9 0.0039 P0.5 retina GGAACCAACA (4) 3.9 0.0039 P0.5 retina AAAGAATTCA (9) 2 0.002 P0.5 retina CAAGTTGGTC (3) 2 0.002 P0.5 retina CCAACGCTTT (2) 2 0.002 P0.5 retina TCTTTAATCC (30) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina CCAACGCTTT (2) 15.8 0.0158 P2.5 retina AAAGAATTCA (9) 8.8 0.0088 P2.5 retina GCCTGTGGTG (2) 5.3 0.0053 P2.5 retina GGCCAAAGGG (6) 5.3 0.0053 P2.5 retina GCTGCCCTGG (12) 3.5 0.0035 P2.5 retina CAGGGTGGGG (2) 1.8 0.0018 P2.5 retina GCCCTGGGGC (7) 1.8 0.0018 P2.5 retina GGAACCAACA (4) 1.8 0.0018 P2.5 retina TCTTTAATCC (30) 1.8 0.0018 P2.5 retina TGGTCACCTG (7) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TCTTTAATCC (30) 9.9 0.0099 P4.5 retina CCAACGCTTT (2) 5.9 0.0059 P4.5 retina AAAGAATTCA (9) 4 0.004 P4.5 retina GTGGCCACCA 4 0.004 P4.5 retina CAAGTTGGTC (3) 2 0.002 P4.5 retina GCCCTGGGGC (7) 2 0.002 P4.5 retina GCCTGTGGTG (2) 2 0.002 P4.5 retina GGAACCAACA (4) 2 0.002 P4.5 retina GGTCTCAGCC (5) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina CCAACGCTTT (2) 10 0.01 P6.5 retina CAAGTTGGTC (3) 8.3 0.0083 P6.5 retina ACTAGCTTGG (4) 3.3 0.0033 P6.5 retina AAAGAATTCA (9) 1.7 0.0017 P6.5 retina GCCCTGGGGC (7) 1.7 0.0017 P6.5 retina GCCTGTGGTG (2) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina GCCTGTGGTG (2) 20.4 0.0204 P10.5 crx- retina CAAGTTGGTC (3) 9.3 0.0093 P10.5 crx- retina CCAACGCTTT (2) 5.6 0.0056 P10.5 crx- retina GCCCTGGGGC (7) 5.6 0.0056 P10.5 crx- retina AAAGAATTCA (9) 1.9 0.0019 P10.5 crx- retina ACTAGCTTGG (4) 1.9 0.0019 P10.5 crx- retina GGAACCAACA (4) 1.9 0.0019 P10.5 crx- retina GGTCTCAGCC (5) 1.9 0.0019 P10.5 crx- retina TACTGAATGC (2) 1.9 0.0019 P10.5 crx- retina TCTTTAATCC (30) 1.9 0.0019 P10.5 crx- retina TGTCTCATTG (2) 1.9 0.0019 P10.5 crx- retina TTTTTGGGGA (5) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina CCAACGCTTT (2) 7.7 0.0077 P10.5 crx+ retina GCCCTGGGGC (7) 3.8 0.0038 P10.5 crx+ retina GCCTGTGGTG (2) 3.8 0.0038 P10.5 crx+ retina ACTAGCTTGG (4) 1.9 0.0019 P10.5 crx+ retina CAGGGTGGGG (2) 1.9 0.0019 P10.5 crx+ retina GGTCTCAGCC (5) 1.9 0.0019 P10.5 crx+ retina TCTTTAATCC (30) 1.9 0.0019 P10.5 crx+ retina TGGTCACCTG (7) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal CAAGTTGGTC (3) 11.1 0.0111 Adult retinal GCCCTGGGGC (7) 9.3 0.0093 Adult retinal TCTTTAATCC (30) 7.4 0.0074 Adult retinal GCGTCAGCTG 5.6 0.0056 Adult retinal CCAACGCTTT (2) 3.7 0.0037 Adult retinal GCTGCCCTGG (12) 3.7 0.0037 Adult retinal AAAGAATTCA (9) 1.9 0.0019 Adult retinal ACCGATGGCT (2) 1.9 0.0019 Adult retinal GGTCTCAGCC (5) 1.9 0.0019 Adult retinal TTTTTGGGGA (5) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL TCTTTAATCC (30) 13.4 0.0134 ONL AAAGAATTCA (9) 1.9 0.0019 ONL CAAGTTGGTC (3) 1.9 0.0019 ONL CTTCACCTTC (3) 1.9 0.0019 ONL GCCCTGGGGC (7) 1.9 0.0019 ONL GCCTGTGGTG (2) 1.9 0.0019 ONL TTTTTGGGGA (5) 1.9 0.0019