Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.1956	Nefl	neurofilament, light polypeptide	14	14 28.7 cM	18039
Gene Ontology	intermediate filament | intermediate filament cytoskeleton organization and biogenesis | protein binding | structural molecule activity
Human Homolog	NEFL[neurofilament, light polypeptide 68kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 104 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATGTGGCTG (10) 101.1 0.1011 P8 Cb GC CAGAACACAC (3) 3.3 0.0033 P8 Cb GC GGAAAAATAG (6) 1.6 0.0016 Cb medulloblastoma GATGTGGCTG (10) 32.4 0.0324 Cb medulloblastoma GGAAAAATAG (6) 13.9 0.0139 Cb medulloblastoma AAAAAAAAAT (25) 4.6 0.0046 Cb medulloblastoma AGTGAATGCA (2) 4.6 0.0046 Cb medulloblastoma ATAAAAAAAT (2) 2.3 0.0023 Cb medulloblastoma CAGAGCAATA 2.3 0.0023 Cb medulloblastoma TATAATTCTG (2) 2.3 0.0023 P8 GC+1d culture GATGTGGCTG (10) 67.4 0.0674 P8 GC+1d culture AAAAAAAAAT (25) 3.4 0.0034 P8 GC+1d culture CAGAACACAC (3) 1.1 0.0011 P8 GC+SHH+1d culture GATGTGGCTG (10) 74.9 0.0749 P8 GC+SHH+1d culture AAAAAAAAAT (25) 5.9 0.0059 P8 GC+SHH+1d culture AGTGAATGCA (2) 2.3 0.0023 P8 GC+SHH+1d culture ATAAAGAAAA (11) 1.2 0.0012 P8 GC+SHH+1d culture CAGAACACAC (3) 1.2 0.0012 P8 GC+SHH+1d culture GGAAAAATAG (6) 1.2 0.0012 3T3 fibroblasts GATGTGGCTG (10) 161.2 0.1612 3T3 fibroblasts CAGAACACAC (3) 3.5 0.0035 E15 cortex GATGTGGCTG (10) 108.9 0.1089 P1 cortex GATGTGGCTG (10) 50 0.05 P1 cortex AAAAAAAAAT (25) 9.1 0.0091 Hypothalamus GATGTGGCTG (10) 65.2 0.0652 Hypothalamus GGAAAAATAG (6) 10.9 0.0109 Hypothalamus AGTGAATGCA (2) 9.1 0.0091 Hypothalamus ATGTGAGTTT (3) 1.8 0.0018 Hypothalamus GTAAAGCCAC 1.8 0.0018 Hypothalamus TATAATTCTG (2) 1.8 0.0018 Hypothalamus TGTGAAAAGC (4) 1.8 0.0018 E12.5 retina GATGTGGCTG (10) 167.1 0.1671 E12.5 retina GGAAAAATAG (6) 11.3 0.0113 E12.5 retina AGTGAATGCA (2) 1.9 0.0019 E12.5 retina CTTATGAGTT 1.9 0.0019 E14.5 retina GATGTGGCTG (10) 120.3 0.1203 E14.5 retina GGAAAAATAG (6) 16.4 0.0164 E14.5 retina AAAAAAAAAT (25) 5.5 0.0055 E14.5 retina AGTGAATGCA (2) 3.6 0.0036 E14.5 retina CACAGGCTGG (4) 3.6 0.0036 E14.5 retina ATAAAGAAAA (11) 1.8 0.0018 E14.5 retina TGTGAAAAGC (4) 1.8 0.0018 E16.5 retina GATGTGGCTG (10) 134 0.134 E16.5 retina GGAAAAATAG (6) 19.9 0.0199 E16.5 retina AGTGAATGCA (2) 12.7 0.0127 E16.5 retina CAGAACACAC (3) 7.2 0.0072 E16.5 retina AAAAAAAAAT (25) 1.8 0.0018 E16.5 retina TATAATTCTG (2) 1.8 0.0018 E18.5 retina GATGTGGCTG (10) 147.3 0.1473 E18.5 retina GGAAAAATAG (6) 20 0.02 E18.5 retina AAAAAAAAAT (25) 7.3 0.0073 E18.5 retina AGTGAATGCA (2) 3.6 0.0036 E18.5 retina ATAAAAAAAT (2) 3.6 0.0036 E18.5 retina CAGAACACAC (3) 3.6 0.0036 E18.5 retina GGAAAAAAAT (11) 1.8 0.0018 P0.5 retina GATGTGGCTG (10) 78.5 0.0785 P0.5 retina AGTGAATGCA (2) 11.8 0.0118 P0.5 retina AAAAAAAAAT (25) 3.9 0.0039 P0.5 retina GGAAAAATAG (6) 3.9 0.0039 P0.5 retina CAGAACACAC (3) 2 0.002 P2.5 retina GATGTGGCTG (10) 66.9 0.0669 P2.5 retina GGAAAAATAG (6) 7 0.007 P2.5 retina AAAAAAAAAT (25) 3.5 0.0035 P2.5 retina AGTGAATGCA (2) 3.5 0.0035 P2.5 retina ATAAAGAAAA (11) 3.5 0.0035 P2.5 retina CTTATGAGTT 1.8 0.0018 P2.5 retina GGAAAAAAAT (11) 1.8 0.0018 P4.5 retina GATGTGGCTG (10) 35.7 0.0357 P4.5 retina GGAAAAATAG (6) 11.9 0.0119 P4.5 retina AAAAAAAAAT (25) 4 0.004 P4.5 retina AGTGAATGCA (2) 4 0.004 P4.5 retina CAGAACACAC (3) 2 0.002 P6.5 retina GATGTGGCTG (10) 36.7 0.0367 P6.5 retina AGTGAATGCA (2) 6.7 0.0067 P6.5 retina GGAAAAATAG (6) 6.7 0.0067 P6.5 retina CAGAGCAATA 1.7 0.0017 P6.5 retina GGAAAAAAAT (11) 1.7 0.0017 P6.5 retina TGTGAAAAGC (4) 1.7 0.0017 P10.5 crx- retina GATGTGGCTG (10) 48.3 0.0483 P10.5 crx- retina GGAAAAATAG (6) 29.7 0.0297 P10.5 crx- retina AGTGAATGCA (2) 27.9 0.0279 P10.5 crx- retina AAAAAAAAAT (25) 3.7 0.0037 P10.5 crx- retina ATGTGAGTTT (3) 1.9 0.0019 P10.5 crx- retina CACAGGCTGG (4) 1.9 0.0019 P10.5 crx- retina CAGAACACAC (3) 1.9 0.0019 P10.5 crx- retina CAGAGCAATA 1.9 0.0019 P10.5 crx- retina TGTGAAAAGC (4) 1.9 0.0019 P10.5 crx+ retina GATGTGGCTG (10) 65.4 0.0654 P10.5 crx+ retina AGTGAATGCA (2) 32.7 0.0327 P10.5 crx+ retina GGAAAAATAG (6) 19.2 0.0192 P10.5 crx+ retina TGTGAAAAGC (4) 3.8 0.0038 P10.5 crx+ retina CTTATGAGTT 1.9 0.0019 Adult retinal AGTGAATGCA (2) 20.4 0.0204 Adult retinal GATGTGGCTG (10) 14.8 0.0148 Adult retinal GGAAAAATAG (6) 3.7 0.0037 Adult retinal GTAAAGCCAC 3.7 0.0037 Adult retinal AAAAAAAAAT (25) 1.9 0.0019 Adult retinal ATAAAGAAAA (11) 1.9 0.0019 ONL GATGTGGCTG (10) 11.5 0.0115 ONL AAAAAAAAAT (25) 1.9 0.0019 ONL AGTGAATGCA (2) 1.9 0.0019 ONL ATGTGAGTTT (3) 1.9 0.0019 ONL GGAAAAAAAT (11) 1.9 0.0019 ONL GGAAAAATAG (6) 1.9 0.0019