Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.200912	Prkab1	protein kinase, AMP-activated, beta 1 non-catalytic subunit	5	5	19079
Gene Ontology	fatty acid biosynthesis | nucleus | response to stress | SNF1A/AMP-activated protein kinase activity
Human Homolog	PRKAB1[protein kinase, AMP-activated, beta 1 non-catalytic subunit]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 101 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACATCATAGA (3) 70.1 0.0701 P8 Cb GC GTGACATCAC (5) 4.9 0.0049 P8 Cb GC TCAGCAGAGG (3) 3.3 0.0033 P8 Cb GC CTGAACACCT (3) 1.6 0.0016 P8 Cb GC TGCTCCTCAG (4) 1.6 0.0016 P8 Cb GC TGTCCTCATT (7) 1.6 0.0016 Cb medulloblastoma ACATCATAGA (3) 20.8 0.0208 Cb medulloblastoma GTGACATCAC (5) 2.3 0.0023 Cb medulloblastoma TGCTCCTCAG (4) 2.3 0.0023 P8 GC+1d culture ACATCATAGA (3) 41.1 0.0411 P8 GC+1d culture TCAGCAGAGG (3) 3.4 0.0034 P8 GC+1d culture CTGAACACCT (3) 1.1 0.0011 P8 GC+1d culture GACAGCCCTG (4) 1.1 0.0011 P8 GC+1d culture GGAGAAAAAG (6) 1.1 0.0011 P8 GC+1d culture TGTCCTCATT (7) 1.1 0.0011 P8 GC+SHH+1d culture ACATCATAGA (3) 52.7 0.0527 P8 GC+SHH+1d culture GTGACATCAC (5) 3.5 0.0035 P8 GC+SHH+1d culture TCAGCAGAGG (3) 3.5 0.0035 P8 GC+SHH+1d culture TGCTCCTCAG (4) 2.3 0.0023 P8 GC+SHH+1d culture TGTCCTCATT (7) 1.2 0.0012 3T3 fibroblasts ACATCATAGA (3) 14 0.014 3T3 fibroblasts CACTTGTGTG (4) 3.5 0.0035 3T3 fibroblasts CTGAACACCT (3) 3.5 0.0035 3T3 fibroblasts GAAACCAGAT (5) 3.5 0.0035 3T3 fibroblasts TCAGCAGAGG (3) 3.5 0.0035 3T3 fibroblasts TGCTCCTCAG (4) 3.5 0.0035 E15 cortex ACATCATAGA (3) 14.8 0.0148 E15 cortex GAAACCAGAT (5) 4.9 0.0049 E15 cortex GACAGCCCTG (4) 4.9 0.0049 E15 cortex GGAGAAAAAG (6) 4.9 0.0049 P1 cortex ACATCATAGA (3) 59.1 0.0591 P1 cortex GACAGCCCTG (4) 9.1 0.0091 P1 cortex GTGACATCAC (5) 4.5 0.0045 Hypothalamus ACATCATAGA (3) 52.5 0.0525 Hypothalamus TCAGCAGAGG (3) 7.2 0.0072 Hypothalamus TGCTCCTCAG (4) 5.4 0.0054 Hypothalamus GACAGCCCTG (4) 1.8 0.0018 Hypothalamus TGAAAGATCA (3) 1.8 0.0018 Hypothalamus TGTCCTCATT (7) 1.8 0.0018 E12.5 retina ACATCATAGA (3) 178.3 0.1783 E12.5 retina TCAGCAGAGG (3) 7.5 0.0075 E12.5 retina GACAGCCCTG (4) 1.9 0.0019 E12.5 retina GTGACATCAC (5) 1.9 0.0019 E14.5 retina ACATCATAGA (3) 109.3 0.1093 E14.5 retina TCAGCAGAGG (3) 3.6 0.0036 E14.5 retina GTGACATCAC (5) 1.8 0.0018 E14.5 retina TGCTCCTCAG (4) 1.8 0.0018 E14.5 retina TGTCCTCATT (7) 1.8 0.0018 E16.5 retina ACATCATAGA (3) 103.2 0.1032 E16.5 retina TCAGCAGAGG (3) 5.4 0.0054 E16.5 retina TGCTCCTCAG (4) 3.6 0.0036 E16.5 retina GTGACATCAC (5) 1.8 0.0018 E16.5 retina TGTCCTCATT (7) 1.8 0.0018 E18.5 retina ACATCATAGA (3) 72.8 0.0728 E18.5 retina TCAGCAGAGG (3) 5.5 0.0055 E18.5 retina GGAGAAAAAG (6) 1.8 0.0018 E18.5 retina GTGACATCAC (5) 1.8 0.0018 P0.5 retina ACATCATAGA (3) 55 0.055 P0.5 retina CTGAACACCT (3) 3.9 0.0039 P0.5 retina TCAGCAGAGG (3) 3.9 0.0039 P0.5 retina TGTCCTCATT (7) 3.9 0.0039 P0.5 retina GTGACATCAC (5) 2 0.002 P2.5 retina ACATCATAGA (3) 44 0.044 P2.5 retina GTGACATCAC (5) 10.6 0.0106 P2.5 retina TCAGCAGAGG (3) 3.5 0.0035 P2.5 retina TGTCCTCATT (7) 1.8 0.0018 P4.5 retina ACATCATAGA (3) 59.4 0.0594 P4.5 retina GTGACATCAC (5) 4 0.004 P4.5 retina TGTCCTCATT (7) 4 0.004 P4.5 retina TCAGCAGAGG (3) 2 0.002 P6.5 retina ACATCATAGA (3) 31.7 0.0317 P6.5 retina GTGACATCAC (5) 11.7 0.0117 P6.5 retina TCAGCAGAGG (3) 6.7 0.0067 P6.5 retina TGTCCTCATT (7) 3.3 0.0033 P6.5 retina GAAACCAGAT (5) 1.7 0.0017 P6.5 retina GACAGCCCTG (4) 1.7 0.0017 P10.5 crx- retina ACATCATAGA (3) 72.5 0.0725 P10.5 crx- retina TCAGCAGAGG (3) 37.2 0.0372 P10.5 crx- retina TGTCCTCATT (7) 3.7 0.0037 P10.5 crx- retina GACAGACCTG (3) 1.9 0.0019 P10.5 crx- retina GACAGCCCTG (4) 1.9 0.0019 P10.5 crx+ retina ACATCATAGA (3) 42.3 0.0423 P10.5 crx+ retina TCAGCAGAGG (3) 34.6 0.0346 P10.5 crx+ retina GACAGACCTG (3) 3.8 0.0038 P10.5 crx+ retina GACAGCCCTG (4) 1.9 0.0019 P10.5 crx+ retina TGAAAGATCA (3) 1.9 0.0019 P10.5 crx+ retina TGTCCTCATT (7) 1.9 0.0019 Adult retinal GTGACATCAC (5) 14.8 0.0148 Adult retinal ACATCATAGA (3) 9.3 0.0093 Adult retinal CACTTGTGTG (4) 9.3 0.0093 Adult retinal TCAGCAGAGG (3) 3.7 0.0037 Adult retinal GAAACCAGAT (5) 1.9 0.0019 Adult retinal GACAGACCTG (3) 1.9 0.0019 Adult retinal GACAGCCCTG (4) 1.9 0.0019 Adult retinal TGTCCTCATT (7) 1.9 0.0019 ONL ACATCATAGA (3) 15.3 0.0153 ONL GTGACATCAC (5) 13.4 0.0134 ONL TGAAAGATCA (3) 3.8 0.0038 ONL GACAGACCTG (3) 1.9 0.0019 ONL TCAGCAGAGG (3) 1.9 0.0019 ONL TGTCCTCATT (7) 1.9 0.0019