Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.204969	Spna2	spectrin alpha 2	2	2 18.0 cM	20740
Gene Ontology	actin binding | calcium ion binding | calmodulin binding | cytoskeleton | membrane
Human Homolog	SPTAN1[spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 112 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC TAAAAGAAAA (6) 14.7 0.0147 P8 Cb GC GTGGAGGAAG (7) 4.9 0.0049 P8 Cb GC AAGAAAGGGG (7) 1.6 0.0016 P8 Cb GC TCAGAACAAG (4) 1.6 0.0016 P8 Cb GC TTTGAGCCAG (3) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma TAAAAGAAAA (6) 64.7 0.0647 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma AGAGGATTTT (3) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture TAAAAGAAAA (6) 24 0.024 P8 GC+1d culture AAGAAAGGGG (7) 2.3 0.0023 P8 GC+1d culture AAGATGCAGG (4) 1.1 0.0011 P8 GC+1d culture TTTGAGCCAG (3) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture TAAAAGAAAA (6) 34 0.034 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture AGAGGATTTT (3) 1.2 0.0012 P8 GC+SHH+1d culture TCAGAACAAG (4) 1.2 0.0012 P8 GC+SHH+1d culture TTAAAGAAAA (3) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex TAAAAGAAAA (6) 9.9 0.0099 E15 cortex TTTGAGCCAG (3) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex TAAAAGAAAA (6) 13.6 0.0136 P1 cortex TTTGAGCCAG (3) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus TAAAAGAAAA (6) 12.7 0.0127 Hypothalamus AAGATGCAGG (4) 1.8 0.0018 Hypothalamus TCAGAACAAG (4) 1.8 0.0018 Hypothalamus TTAAAGAAAA (3) 1.8 0.0018 Hypothalamus TTTGAGCCAG (3) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina TAAAAGAAAA (6) 15 0.015 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina TAAAAGAAAA (6) 21.9 0.0219 E14.5 retina AAGATGCAGG (4) 1.8 0.0018 E14.5 retina TACATAGCTG (3) 1.8 0.0018 E14.5 retina TCAGAACAAG (4) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina TAAAAGAAAA (6) 21.7 0.0217 E16.5 retina TACATAGCTG (3) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina TAAAAGAAAA (6) 20 0.02 E18.5 retina AAGATGCAGG (4) 1.8 0.0018 E18.5 retina AGAGGATTTT (3) 1.8 0.0018 E18.5 retina TTAAAGAAAA (3) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina TAAAAGAAAA (6) 7.9 0.0079 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina TAAAAGAAAA (6) 26.4 0.0264 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina TAAAAGAAAA (6) 47.6 0.0476 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina AGAGGATTTT (3) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina TAAAAGAAAA (6) 28.3 0.0283 P6.5 retina AAGAAAGGGG (7) 1.7 0.0017 P6.5 retina TTAAAGAAAA (3) 1.7 0.0017 P6.5 retina TTTGAGCCAG (3) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina TAAAAGAAAA (6) 20.4 0.0204 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina TAAAAGAAAA (6) 13.5 0.0135 P10.5 crx+ retina AGAGGATTTT (3) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal TAAAAGAAAA (6) 3.7 0.0037 Adult retinal TCAGAACAAG (4) 3.7 0.0037 Adult retinal GTGGAGGAAG (7) 1.9 0.0019 Adult retinal TTTGAGCCAG (3) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL CCTTTAATCC (355) 84.3 0.0843 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL TAAAAGAAAA (6) 21.1 0.0211 ONL TACATAGCTG (3) 1.9 0.0019