Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.209265	C78997	expressed sequence C78997	1		96887
Mm.209265	C130021H21Rik	RIKEN cDNA C130021H21 gene			320693
Mm.209265	6720416K24Rik	RIKEN cDNA 6720416K24 gene	1		320464
Mm.209265	Trip12	thyroid hormone receptor interactor 12	9		14897
Mm.209265	1110036I07Rik	RIKEN cDNA 1110036I07 gene	1		73751
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 150 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTTTCTTTTT (10) 8.2 0.0082 P8 Cb GC CCTTTAATCT (38) 4.9 0.0049 P8 Cb GC TTCCTCCCTC (6) 4.9 0.0049 P8 Cb GC TATTTTTTTC (9) 3.3 0.0033 P8 Cb GC AATGTCAGCT (6) 1.6 0.0016 P8 Cb GC ACCAAACTGA (6) 1.6 0.0016 P8 Cb GC ATTTCTTTTC (7) 1.6 0.0016 P8 Cb GC GTGCTAGGAA (6) 1.6 0.0016 P8 Cb GC TGTATTTGAA (5) 1.6 0.0016 P8 Cb GC TTTGTGTAAA (7) 1.6 0.0016 Cb medulloblastoma ATTTCTTTTC (7) 23.1 0.0231 Cb medulloblastoma ATTTTTTTCT (11) 2.3 0.0023 Cb medulloblastoma GGGAACGCAA (5) 2.3 0.0023 Cb medulloblastoma GTATTTCCCT (5) 2.3 0.0023 Cb medulloblastoma TATTTTTTTC (9) 2.3 0.0023 Cb medulloblastoma TTTGTGTAAA (7) 2.3 0.0023 P8 GC+1d culture TTCCTCCCTC (6) 9.1 0.0091 P8 GC+1d culture TTTTCTTTTT (10) 8 0.008 P8 GC+1d culture ATTTTATTGA (10) 2.3 0.0023 P8 GC+1d culture ACCAAACTGA (6) 1.1 0.0011 P8 GC+1d culture ACCACCTCTG (5) 1.1 0.0011 P8 GC+1d culture ATTTCTTTTC (7) 1.1 0.0011 P8 GC+1d culture CCTTTAATCT (38) 1.1 0.0011 P8 GC+1d culture TATTTTTTTC (9) 1.1 0.0011 P8 GC+1d culture TGTATTTGAC (7) 1.1 0.0011 P8 GC+SHH+1d culture TTTTCTTTTT (10) 4.7 0.0047 P8 GC+SHH+1d culture CCTTTAATCT (38) 3.5 0.0035 P8 GC+SHH+1d culture ATTTTATTGA (10) 2.3 0.0023 P8 GC+SHH+1d culture AATGGCTGTT (8) 1.2 0.0012 P8 GC+SHH+1d culture AATGTCAGCT (6) 1.2 0.0012 P8 GC+SHH+1d culture ACCAAACTGA (6) 1.2 0.0012 P8 GC+SHH+1d culture ACCACCTCTG (5) 1.2 0.0012 P8 GC+SHH+1d culture ACTAGTGCTT (80) 1.2 0.0012 P8 GC+SHH+1d culture GGGAACGCAA (5) 1.2 0.0012 P8 GC+SHH+1d culture TGTATTTGAC (7) 1.2 0.0012 P8 GC+SHH+1d culture TTTCTCCCTC (6) 1.2 0.0012 P8 GC+SHH+1d culture TTTGTGTAAA (7) 1.2 0.0012 3T3 fibroblasts CCTTTAATCT (38) 10.5 0.0105 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts TTTTCTTTTT (10) 7 0.007 3T3 fibroblasts GTATTTCCCT (5) 3.5 0.0035 E15 cortex ACCAAACTGA (6) 4.9 0.0049 E15 cortex GGGAACGCAA (5) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex CCTTTAATCT (38) 4.5 0.0045 P1 cortex CTGTTTCAAG (6) 4.5 0.0045 P1 cortex TTCCTCCCTC (6) 4.5 0.0045 Hypothalamus TTTTCTTTTT (10) 5.4 0.0054 Hypothalamus GGGAACGCAA (5) 3.6 0.0036 Hypothalamus ATTTCTTTTC (7) 1.8 0.0018 Hypothalamus CCTTTAATCT (38) 1.8 0.0018 Hypothalamus TTCCTCCCTC (6) 1.8 0.0018 E12.5 retina ACCAAACTGA (6) 3.8 0.0038 E12.5 retina AATGGCTGTT (8) 1.9 0.0019 E12.5 retina ACTAGTGCTT (80) 1.9 0.0019 E12.5 retina ATTTTATTGA (10) 1.9 0.0019 E12.5 retina CCTTTAATCT (38) 1.9 0.0019 E12.5 retina GAAACCTTAC (7) 1.9 0.0019 E12.5 retina GTATTTCCCT (5) 1.9 0.0019 E12.5 retina TTTTCTTTTT (10) 1.9 0.0019 E14.5 retina CCTTTAATCT (38) 12.8 0.0128 E14.5 retina ACCAAACTGA (6) 3.6 0.0036 E14.5 retina AATGTCAGCT (6) 1.8 0.0018 E14.5 retina ACCACCTCTG (5) 1.8 0.0018 E14.5 retina ATTTTTTTCT (11) 1.8 0.0018 E14.5 retina GTATTTCCCT (5) 1.8 0.0018 E14.5 retina TATTTTTTTC (9) 1.8 0.0018 E14.5 retina TTCCTCCCTC (6) 1.8 0.0018 E14.5 retina TTTCTCCCTC (6) 1.8 0.0018 E14.5 retina TTTTCTTTTT (10) 1.8 0.0018 E16.5 retina AATGGCTGTT (8) 3.6 0.0036 E16.5 retina ACCAAACTGA (6) 3.6 0.0036 E16.5 retina GAAACCTTAC (7) 3.6 0.0036 E16.5 retina TTTCTCCCTC (6) 3.6 0.0036 E16.5 retina TTTTCTTTTT (10) 3.6 0.0036 E16.5 retina TTCCTCCCTC (6) 1.8 0.0018 E18.5 retina TTTTCTTTTT (10) 7.3 0.0073 E18.5 retina GGGAACGCAA (5) 1.8 0.0018 E18.5 retina GTATTTCCCT (5) 1.8 0.0018 E18.5 retina TTCCCCCCCC (8) 1.8 0.0018 P0.5 retina AATGGCTGTT (8) 5.9 0.0059 P0.5 retina TTCCTCCCTC (6) 5.9 0.0059 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina ACCAAACTGA (6) 2 0.002 P0.5 retina ACCACCTCTG (5) 2 0.002 P0.5 retina CCTTTAATCT (38) 2 0.002 P0.5 retina CTGTTTCAAG (6) 2 0.002 P2.5 retina CACTTTGCTG (7) 14.1 0.0141 P2.5 retina TTCCTCCCTC (6) 5.3 0.0053 P2.5 retina CCTTTAATCT (38) 3.5 0.0035 P2.5 retina GGGAACGCAA (5) 3.5 0.0035 P2.5 retina GCTCACTGAG (8) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina GTGCTAGGAA (6) 1.8 0.0018 P2.5 retina TATTTTTTTC (9) 1.8 0.0018 P2.5 retina TGTATTTGAA (5) 1.8 0.0018 P2.5 retina TTTGTGTAAA (7) 1.8 0.0018 P2.5 retina TTTTCTTTTT (10) 1.8 0.0018 P4.5 retina CACTTTGCTG (7) 39.6 0.0396 P4.5 retina CCTTTAATCT (38) 4 0.004 P4.5 retina ACTAGTGCTT (80) 2 0.002 P4.5 retina ATTTTATTGA (10) 2 0.002 P4.5 retina ATTTTTTTCT (11) 2 0.002 P4.5 retina GGGAACGCAA (5) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TTCCTCCCTC (6) 2 0.002 P4.5 retina TTTCTCCCTC (6) 2 0.002 P6.5 retina CACTTTGCTG (7) 65 0.065 P6.5 retina CCTTTAATCT (38) 11.7 0.0117 P6.5 retina TTCCTCCCTC (6) 6.7 0.0067 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina TTCCCCCCCC (8) 3.3 0.0033 P6.5 retina AATGGCTGTT (8) 1.7 0.0017 P6.5 retina ACCAAACTGA (6) 1.7 0.0017 P6.5 retina ATTTTATTGA (10) 1.7 0.0017 P6.5 retina GCTCACTGAG (8) 1.7 0.0017 P6.5 retina GTATTTCCCT (5) 1.7 0.0017 P6.5 retina TTTTCTTTTT (10) 1.7 0.0017 P10.5 crx- retina CACTTTGCTG (7) 24.2 0.0242 P10.5 crx- retina AATGGCTGTT (8) 5.6 0.0056 P10.5 crx- retina GCTCACTGAG (8) 1.9 0.0019 P10.5 crx- retina GTATTTCCCT (5) 1.9 0.0019 P10.5 crx- retina TTTCTCCCTC (6) 1.9 0.0019 P10.5 crx+ retina CACTTTGCTG (7) 55.8 0.0558 P10.5 crx+ retina GGGAACGCAA (5) 3.8 0.0038 P10.5 crx+ retina TTTTCTTTTT (10) 3.8 0.0038 P10.5 crx+ retina GAAACCTTAC (7) 1.9 0.0019 P10.5 crx+ retina GCTCACTGAG (8) 1.9 0.0019 P10.5 crx+ retina TGTATTTGAC (7) 1.9 0.0019 Adult retinal CACTTTGCTG (7) 9.3 0.0093 Adult retinal TTTCTCCCTC (6) 9.3 0.0093 Adult retinal CCTTTAATCT (38) 7.4 0.0074 Adult retinal TTCCTCCCTC (6) 3.7 0.0037 Adult retinal ATTTCTTTTC (7) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal GTGCTAGGAA (6) 1.9 0.0019 Adult retinal TGTATTTGAA (5) 1.9 0.0019 ONL CACTTTGCTG (7) 17.2 0.0172 ONL CCTTTAATCT (38) 11.5 0.0115 ONL AATGTCAGCT (6) 7.7 0.0077 ONL GTCATAGCTG (590) 5.7 0.0057 ONL TTTCTCCCTC (6) 3.8 0.0038 ONL TTTTCTTTTT (10) 3.8 0.0038 ONL AATGGCTGTT (8) 1.9 0.0019 ONL ACCAAACTGA (6) 1.9 0.0019 ONL ATTTCTTTTC (7) 1.9 0.0019 ONL ATTTTTTTCT (11) 1.9 0.0019 ONL GCTCACTGAG (8) 1.9 0.0019 ONL GTATTTCCCT (5) 1.9 0.0019 ONL TGTATTTGAC (7) 1.9 0.0019