Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.21281	A830049F12Rik	RIKEN cDNA A830049F12 gene	5		319915
Mm.21281	Rnf4	ring finger protein 4	5		19822
Gene Ontology	nucleus | protein ubiquitination | regulation of transcription, DNA-dependent | ubiquitin ligase complex | ubiquitin-protein ligase activity | zinc ion binding
Human Homolog	RNF4[ring finger protein 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 116 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC GGTATCAGTC (2) 24.5 0.0245 P8 Cb GC TACAAAAAAA (9) 6.5 0.0065 P8 Cb GC GTATCTGCCT (4) 4.9 0.0049 P8 Cb GC TAGAAAAAAA (8) 3.3 0.0033 P8 Cb GC AGCATAGTTT (2) 1.6 0.0016 P8 Cb GC TTGGCCAAGT (4) 1.6 0.0016 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma GGTATCAGTC (2) 13.9 0.0139 Cb medulloblastoma TACAAAAAAA (9) 9.2 0.0092 Cb medulloblastoma CTTTCCAAAT (3) 4.6 0.0046 Cb medulloblastoma TAGAAAAAAA (8) 2.3 0.0023 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture GGTATCAGTC (2) 8 0.008 P8 GC+1d culture TAGAAAAAAA (8) 5.7 0.0057 P8 GC+1d culture GGCTGAGCCT (8) 3.4 0.0034 P8 GC+1d culture TACAAAAAAA (9) 2.3 0.0023 P8 GC+1d culture AGAGATTGAA (4) 1.1 0.0011 P8 GC+1d culture AGCATAGTTT (2) 1.1 0.0011 P8 GC+1d culture GCCCCGCCCC (5) 1.1 0.0011 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture GGTATCAGTC (2) 14.1 0.0141 P8 GC+SHH+1d culture TAGAAAAAAA (8) 3.5 0.0035 P8 GC+SHH+1d culture TACAAAAAAA (9) 2.3 0.0023 P8 GC+SHH+1d culture AGCATAGTTT (2) 1.2 0.0012 3T3 fibroblasts GGTATCAGTC (2) 14 0.014 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 3T3 fibroblasts AGGGCAACAA (3) 3.5 0.0035 3T3 fibroblasts GGCTGAGCCT (8) 3.5 0.0035 E15 cortex GGTATCAGTC (2) 24.7 0.0247 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex GCCCCGCCCC (5) 4.5 0.0045 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus GGTATCAGTC (2) 5.4 0.0054 Hypothalamus GTAGAAAACA (4) 3.6 0.0036 Hypothalamus TAGAAAAAAA (8) 3.6 0.0036 Hypothalamus AGAGATTGAA (4) 1.8 0.0018 Hypothalamus AGCATAGTTT (2) 1.8 0.0018 Hypothalamus AGGCCCCAGA (4) 1.8 0.0018 Hypothalamus AGGGCAACAA (3) 1.8 0.0018 Hypothalamus CAGCCAGTTC (3) 1.8 0.0018 Hypothalamus GGCTGAGCCT (8) 1.8 0.0018 E12.5 retina GGTATCAGTC (2) 24.4 0.0244 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina CTTTCCAAAT (3) 1.9 0.0019 E12.5 retina GGCTGAGCCT (8) 1.9 0.0019 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina GGTATCAGTC (2) 5.5 0.0055 E14.5 retina GGCTGAGCCT (8) 3.6 0.0036 E14.5 retina TACAAAAAAA (9) 3.6 0.0036 E14.5 retina AGGGCAACAA (3) 1.8 0.0018 E14.5 retina TAGAAAAAAA (8) 1.8 0.0018 E14.5 retina TTGGCCAAGT (4) 1.8 0.0018 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina GGTATCAGTC (2) 12.7 0.0127 E16.5 retina AGCATAGTTT (2) 1.8 0.0018 E16.5 retina CAGCCAGTTC (3) 1.8 0.0018 E16.5 retina GCCCCGCCCC (5) 1.8 0.0018 E16.5 retina GTAGAAAACA (4) 1.8 0.0018 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina GGTATCAGTC (2) 18.2 0.0182 E18.5 retina AGCATAGTTT (2) 3.6 0.0036 E18.5 retina GCCCCGCCCC (5) 3.6 0.0036 E18.5 retina AGAGATTGAA (4) 1.8 0.0018 E18.5 retina TACAAAAAAA (9) 1.8 0.0018 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina GGTATCAGTC (2) 17.7 0.0177 P0.5 retina AGGCCCCAGA (4) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina CTTTCCAAAT (3) 2 0.002 P0.5 retina TAGAAAAAAA (8) 2 0.002 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina GGTATCAGTC (2) 15.8 0.0158 P2.5 retina TACAAAAAAA (9) 5.3 0.0053 P2.5 retina AGCATAGTTT (2) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina GGTATCAGTC (2) 9.9 0.0099 P4.5 retina TACAAAAAAA (9) 7.9 0.0079 P4.5 retina GCCCCGCCCC (5) 2 0.002 P4.5 retina GGCTGAGCCT (8) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TTGGCCAAGT (4) 2 0.002 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina GGTATCAGTC (2) 18.3 0.0183 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina AGCATAGTTT (2) 1.7 0.0017 P6.5 retina AGGCCCCAGA (4) 1.7 0.0017 P6.5 retina GGCTGAGCCT (8) 1.7 0.0017 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina GGTATCAGTC (2) 7.4 0.0074 P10.5 crx- retina GGCTGAGCCT (8) 5.6 0.0056 P10.5 crx- retina CAGCCAGTTC (3) 1.9 0.0019 P10.5 crx- retina GTAGAAAACA (4) 1.9 0.0019 P10.5 crx- retina TACAAAAAAA (9) 1.9 0.0019 P10.5 crx- retina TAGAAAAAAA (8) 1.9 0.0019 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina GGTATCAGTC (2) 15.4 0.0154 P10.5 crx+ retina AGCATAGTTT (2) 3.8 0.0038 P10.5 crx+ retina CAGCCAGTTC (3) 1.9 0.0019 P10.5 crx+ retina GGCTGAGCCT (8) 1.9 0.0019 P10.5 crx+ retina TACAAAAAAA (9) 1.9 0.0019 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal GGTATCAGTC (2) 7.4 0.0074 Adult retinal GCCCCGCCCC (5) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TACAAAAAAA (9) 1.9 0.0019 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL GGTATCAGTC (2) 5.7 0.0057 ONL GTCATAGCTG (590) 5.7 0.0057 ONL GGCTGAGCCT (8) 3.8 0.0038 ONL TACAAAAAAA (9) 3.8 0.0038 ONL TAGAAAAAAA (8) 1.9 0.0019