Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.213298
1700016B15Rik
RIKEN cDNA 1700016B15 gene
7
69427
Mm.213298
9030624J02Rik
RIKEN cDNA 9030624J02 gene
7
71517
Human Homolog
MGC16824[esophageal cancer associated protein]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 87 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CAAAAAAAAA (
157
)
47.3
0.0473
P8 Cb GC
CTGCAAAAAA (
4
)
3.3
0.0033
P8 Cb GC
AATCATCTGT
(
3
)
1.6
0.0016
P8 Cb GC
AGAATTTGGT (
6
)
1.6
0.0016
P8 Cb GC
TCTGGGTTTA
(
3
)
1.6
0.0016
P8 Cb GC
TTTGCAGCCA
(
7
)
1.6
0.0016
Cb medulloblastoma
CAAAAAAAAA (
157
)
92.5
0.0925
Cb medulloblastoma
CTGCAAAAAA (
4
)
11.6
0.0116
Cb medulloblastoma
AGAATTTGGT (
6
)
6.9
0.0069
Cb medulloblastoma
CCAGAACCCA
(
3
)
4.6
0.0046
Cb medulloblastoma
TCTGGGTTTA
(
3
)
4.6
0.0046
Cb medulloblastoma
AGCCAGGACA (
6
)
2.3
0.0023
Cb medulloblastoma
TTTGCAGCCA
(
7
)
2.3
0.0023
P8 GC+1d culture
CAAAAAAAAA (
157
)
37.7
0.0377
P8 GC+1d culture
TTTGCAGCCA
(
7
)
8
0.008
P8 GC+1d culture
TCTGGGTTTA
(
3
)
5.7
0.0057
P8 GC+1d culture
CTGCAAAAAA (
4
)
3.4
0.0034
P8 GC+1d culture
CCAGAACCCA
(
3
)
2.3
0.0023
P8 GC+1d culture
AGAATTTGGT (
6
)
1.1
0.0011
P8 GC+SHH+1d culture
CAAAAAAAAA (
157
)
58.5
0.0585
P8 GC+SHH+1d culture
TTTGCAGCCA
(
7
)
9.4
0.0094
P8 GC+SHH+1d culture
CTGCAAAAAA (
4
)
2.3
0.0023
3T3 fibroblasts
TTTGCAGCCA
(
7
)
10.5
0.0105
3T3 fibroblasts
GCCCAGAAGT
(
5
)
7
0.007
E15 cortex
CAAAAAAAAA (
157
)
34.6
0.0346
E15 cortex
TTTGCAGCCA
(
7
)
4.9
0.0049
P1 cortex
CAAAAAAAAA (
157
)
22.7
0.0227
P1 cortex
AGAATTTGGT (
6
)
9.1
0.0091
P1 cortex
TCTGGGTTTA
(
3
)
9.1
0.0091
P1 cortex
GCCCAGAAGT
(
5
)
4.5
0.0045
P1 cortex
TCAGAGAAGG
(
6
)
4.5
0.0045
Hypothalamus
CAAAAAAAAA (
157
)
39.8
0.0398
Hypothalamus
CTGCAAAAAA (
4
)
5.4
0.0054
Hypothalamus
TTTTGTGTTT
(
5
)
1.8
0.0018
E12.5 retina
CAAAAAAAAA (
157
)
22.5
0.0225
E12.5 retina
AGAATTTGGT (
6
)
5.6
0.0056
E12.5 retina
CTGCAAAAAA (
4
)
3.8
0.0038
E12.5 retina
TTTGCAGCCA
(
7
)
3.8
0.0038
E12.5 retina
TCTGGGTTTA
(
3
)
1.9
0.0019
E14.5 retina
CAAAAAAAAA (
157
)
9.1
0.0091
E14.5 retina
AATCATCTGT
(
3
)
1.8
0.0018
E14.5 retina
AGAATTTGGT (
6
)
1.8
0.0018
E14.5 retina
TTTGCAGCCA
(
7
)
1.8
0.0018
E16.5 retina
CAAAAAAAAA (
157
)
9.1
0.0091
E16.5 retina
TTTGCAGCCA
(
7
)
3.6
0.0036
E16.5 retina
AGAATTTGGT (
6
)
1.8
0.0018
E16.5 retina
AGCCAGGACA (
6
)
1.8
0.0018
E16.5 retina
TCTGGGTTTA
(
3
)
1.8
0.0018
E16.5 retina
TTTTGTGTTT
(
5
)
1.8
0.0018
E18.5 retina
CAAAAAAAAA (
157
)
41.8
0.0418
E18.5 retina
CTGCAAAAAA (
4
)
3.6
0.0036
E18.5 retina
TCTGGGTTTA
(
3
)
1.8
0.0018
E18.5 retina
TTTGCAGCCA
(
7
)
1.8
0.0018
P0.5 retina
CAAAAAAAAA (
157
)
137.4
0.1374
P0.5 retina
CTGCAAAAAA (
4
)
3.9
0.0039
P0.5 retina
CCAGAACCCA
(
3
)
2
0.002
P0.5 retina
TTTGCAGCCA
(
7
)
2
0.002
P2.5 retina
CAAAAAAAAA (
157
)
52.8
0.0528
P2.5 retina
TCTGGGTTTA
(
3
)
3.5
0.0035
P2.5 retina
TTTGCAGCCA
(
7
)
3.5
0.0035
P4.5 retina
CAAAAAAAAA (
157
)
41.6
0.0416
P4.5 retina
CTGCAAAAAA (
4
)
4
0.004
P4.5 retina
TTTGCAGCCA
(
7
)
4
0.004
P4.5 retina
AGAATTTGGT (
6
)
2
0.002
P6.5 retina
CAAAAAAAAA (
157
)
31.7
0.0317
P6.5 retina
CTGCAAAAAA (
4
)
1.7
0.0017
P6.5 retina
TCTGGGTTTA
(
3
)
1.7
0.0017
P6.5 retina
TTTTGTGTTT
(
5
)
1.7
0.0017
P10.5 crx- retina
CAAAAAAAAA (
157
)
13
0.013
P10.5 crx- retina
AGAATTTGGT (
6
)
5.6
0.0056
P10.5 crx- retina
AATCATCTGT
(
3
)
3.7
0.0037
P10.5 crx- retina
TCAGAGAAGG
(
6
)
3.7
0.0037
P10.5 crx- retina
TTTGCAGCCA
(
7
)
1.9
0.0019
P10.5 crx- retina
TTTTGTGTTT
(
5
)
1.9
0.0019
P10.5 crx+ retina
CAAAAAAAAA (
157
)
32.7
0.0327
P10.5 crx+ retina
AGCCAGGACA (
6
)
1.9
0.0019
P10.5 crx+ retina
CTGCAAAAAA (
4
)
1.9
0.0019
P10.5 crx+ retina
TTTGCAGCCA
(
7
)
1.9
0.0019
Adult retinal
CAAAAAAAAA (
157
)
20.4
0.0204
Adult retinal
AGAATTTGGT (
6
)
3.7
0.0037
Adult retinal
AATCATCTGT
(
3
)
1.9
0.0019
Adult retinal
CTGCAAAAAA (
4
)
1.9
0.0019
ONL
CAAAAAAAAA (
157
)
17.2
0.0172
ONL
CTGCAAAAAA (
4
)
3.8
0.0038
ONL
TTTGCAGCCA
(
7
)
3.8
0.0038
ONL
CCAGAACCCA
(
3
)
1.9
0.0019
ONL
TCAGAGAAGG
(
6
)
1.9
0.0019
