Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.215034
RNU19
RNA, U19 small nucleolar
18
436583
Mm.215034
1110061A14Rik
RIKEN cDNA 1110061A14 gene
18
68827
Mm.215034
AY223547
cDNA sequence AY223547
448986
Mm.215034
Matr3
matrin 3
18
18 15.0 cM
17184
Mm.215034
2810017I02Rik
RIKEN cDNA 2810017I02 gene
18
69967
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 229 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
CAAAAAAAAA (
157
)
47.3
0.0473
P8 Cb GC
TATAATCTGT
(
5
)
24.5
0.0245
P8 Cb GC
TTTGGATGTT
(
8
)
8.2
0.0082
P8 Cb GC
TGACCTTTGT
(
7
)
4.9
0.0049
P8 Cb GC
TTGAAAAAAA
(
15
)
4.9
0.0049
P8 Cb GC
AATTACAAGC (
8
)
3.3
0.0033
P8 Cb GC
CTGCTGTGGA (
8
)
3.3
0.0033
P8 Cb GC
AATGAAGTTC
(
5
)
1.6
0.0016
P8 Cb GC
AATTAGAAGC
(
6
)
1.6
0.0016
P8 Cb GC
ACATTAAAAG
(
7
)
1.6
0.0016
P8 Cb GC
ACCCTGTGAA (
7
)
1.6
0.0016
P8 Cb GC
AGGTCACCCT
(
6
)
1.6
0.0016
P8 Cb GC
CAAAAAGGCA
(
6
)
1.6
0.0016
P8 Cb GC
GGAAAATAAA (
15
)
1.6
0.0016
P8 Cb GC
TGGTGCCTCT (
7
)
1.6
0.0016
Cb medulloblastoma
CAAAAAAAAA (
157
)
92.5
0.0925
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
TATAATCTGT
(
5
)
6.9
0.0069
Cb medulloblastoma
TGGCCGGCTA
(
5
)
6.9
0.0069
Cb medulloblastoma
TTTGGATGTT
(
8
)
6.9
0.0069
Cb medulloblastoma
CAGGATTCCT
(
5
)
4.6
0.0046
Cb medulloblastoma
CTTTAACAAA
(
5
)
4.6
0.0046
Cb medulloblastoma
TGGTGCCTCT (
7
)
4.6
0.0046
Cb medulloblastoma
AATGAAGTTC
(
5
)
2.3
0.0023
Cb medulloblastoma
ACCCTGTGAA (
7
)
2.3
0.0023
Cb medulloblastoma
CAAAAAGGCA
(
6
)
2.3
0.0023
Cb medulloblastoma
GAAGTCGTTC
(
6
)
2.3
0.0023
Cb medulloblastoma
GTGGCATATA
(
13
)
2.3
0.0023
Cb medulloblastoma
TTGAAAAAAA
(
15
)
2.3
0.0023
P8 GC+1d culture
CAAAAAAAAA (
157
)
37.7
0.0377
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
TATAATCTGT
(
5
)
14.8
0.0148
P8 GC+1d culture
AATTACAAGC (
8
)
12.6
0.0126
P8 GC+1d culture
TTTGGATGTT
(
8
)
6.8
0.0068
P8 GC+1d culture
TGGTGCCTCT (
7
)
5.7
0.0057
P8 GC+1d culture
CTGTTTAGAT
(
8
)
3.4
0.0034
P8 GC+1d culture
ACCCTGTGAA (
7
)
2.3
0.0023
P8 GC+1d culture
TGGCCGGCTA
(
5
)
2.3
0.0023
P8 GC+1d culture
AATGAAGTTC
(
5
)
1.1
0.0011
P8 GC+1d culture
CAGGATTCCT
(
5
)
1.1
0.0011
P8 GC+1d culture
CTTTAACAAA
(
5
)
1.1
0.0011
P8 GC+1d culture
TGTGTGTGAG (
13
)
1.1
0.0011
P8 GC+1d culture
TTGAAAAAAA
(
15
)
1.1
0.0011
P8 GC+SHH+1d culture
CAAAAAAAAA (
157
)
58.5
0.0585
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
TATAATCTGT
(
5
)
17.6
0.0176
P8 GC+SHH+1d culture
TTTGGATGTT
(
8
)
11.7
0.0117
P8 GC+SHH+1d culture
TGGTGCCTCT (
7
)
10.5
0.0105
P8 GC+SHH+1d culture
TTGAAAAAAA
(
15
)
9.4
0.0094
P8 GC+SHH+1d culture
ACCCTGTGAA (
7
)
4.7
0.0047
P8 GC+SHH+1d culture
AATTACAAGC (
8
)
3.5
0.0035
P8 GC+SHH+1d culture
AATGAAGTTC
(
5
)
2.3
0.0023
P8 GC+SHH+1d culture
AATTAGAAGC
(
6
)
2.3
0.0023
P8 GC+SHH+1d culture
CTGTTTAGAT
(
8
)
2.3
0.0023
P8 GC+SHH+1d culture
AGGTCACCCT
(
6
)
1.2
0.0012
P8 GC+SHH+1d culture
CTTTAACAAA
(
5
)
1.2
0.0012
P8 GC+SHH+1d culture
GAAGTCGTTC
(
6
)
1.2
0.0012
P8 GC+SHH+1d culture
TGGCCGGCTA
(
5
)
1.2
0.0012
P8 GC+SHH+1d culture
TGTGTGTGAG (
13
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
TGGTGCCTCT (
7
)
21
0.021
3T3 fibroblasts
AATTAGAAGC
(
6
)
3.5
0.0035
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
CAAAAAAAAA (
157
)
34.6
0.0346
E15 cortex
CTTCTTGAAT
(
7
)
4.9
0.0049
E15 cortex
GTGGCATATA
(
13
)
4.9
0.0049
E15 cortex
TATAATCTGT
(
5
)
4.9
0.0049
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
TATAATCTGT
(
5
)
45.5
0.0455
P1 cortex
CAAAAAAAAA (
157
)
22.7
0.0227
P1 cortex
CAGGATTCCT
(
5
)
9.1
0.0091
P1 cortex
AATTACAAGC (
8
)
4.5
0.0045
P1 cortex
ACATTAAAAG
(
7
)
4.5
0.0045
P1 cortex
TGGCCGGCTA
(
5
)
4.5
0.0045
P1 cortex
TTTGGATGTT
(
8
)
4.5
0.0045
Hypothalamus
CAAAAAAAAA (
157
)
39.8
0.0398
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
TATAATCTGT
(
5
)
10.9
0.0109
Hypothalamus
AATTACAAGC (
8
)
9.1
0.0091
Hypothalamus
CAGGATTCCT
(
5
)
9.1
0.0091
Hypothalamus
TTTGGATGTT
(
8
)
9.1
0.0091
Hypothalamus
GGAAAATAAA (
15
)
1.8
0.0018
Hypothalamus
TGGCCGGCTA
(
5
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
CAAAAAAAAA (
157
)
22.5
0.0225
E12.5 retina
ACCCTGTGAA (
7
)
11.3
0.0113
E12.5 retina
TATAATCTGT
(
5
)
11.3
0.0113
E12.5 retina
AATTACAAGC (
8
)
5.6
0.0056
E12.5 retina
CTTCTTGAAT
(
7
)
1.9
0.0019
E12.5 retina
TGGTGCCTCT (
7
)
1.9
0.0019
E12.5 retina
TTGAAAAAAA
(
15
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
CAAAAAAAAA (
157
)
9.1
0.0091
E14.5 retina
TATAATCTGT
(
5
)
9.1
0.0091
E14.5 retina
TTTGGATGTT
(
8
)
9.1
0.0091
E14.5 retina
AATTACAAGC (
8
)
5.5
0.0055
E14.5 retina
GAAAATGGGA (
6
)
5.5
0.0055
E14.5 retina
TGGTGCCTCT (
7
)
3.6
0.0036
E14.5 retina
AATTAGAAGC
(
6
)
1.8
0.0018
E14.5 retina
AGTCTGGAGC (
6
)
1.8
0.0018
E14.5 retina
CTGTTTAGAT
(
8
)
1.8
0.0018
E14.5 retina
GAAGTCGTTC
(
6
)
1.8
0.0018
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
CAAAAAAAAA (
157
)
9.1
0.0091
E16.5 retina
TATAATCTGT
(
5
)
9.1
0.0091
E16.5 retina
TTTGGATGTT
(
8
)
7.2
0.0072
E16.5 retina
TGGTGCCTCT (
7
)
3.6
0.0036
E16.5 retina
AATTACAAGC (
8
)
1.8
0.0018
E16.5 retina
CTTCTTGAAT
(
7
)
1.8
0.0018
E16.5 retina
CTTTAACAAA
(
5
)
1.8
0.0018
E16.5 retina
GTGGCATATA
(
13
)
1.8
0.0018
E16.5 retina
TGACCTTTGT
(
7
)
1.8
0.0018
E16.5 retina
TGGCCGGCTA
(
5
)
1.8
0.0018
E18.5 retina
CAAAAAAAAA (
157
)
41.8
0.0418
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
TATAATCTGT
(
5
)
12.7
0.0127
E18.5 retina
TTTGGATGTT
(
8
)
10.9
0.0109
E18.5 retina
CTGTTTAGAT
(
8
)
5.5
0.0055
E18.5 retina
TTGAAAAAAA
(
15
)
5.5
0.0055
E18.5 retina
TGTGTGTGAG (
13
)
3.6
0.0036
E18.5 retina
AATTACAAGC (
8
)
1.8
0.0018
E18.5 retina
ACATTAAAAG
(
7
)
1.8
0.0018
E18.5 retina
TGGTGCCTCT (
7
)
1.8
0.0018
P0.5 retina
CAAAAAAAAA (
157
)
137.4
0.1374
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
TATAATCTGT
(
5
)
15.7
0.0157
P0.5 retina
TTTGGATGTT
(
8
)
7.9
0.0079
P0.5 retina
CACAAAAAAT
(
6
)
3.9
0.0039
P0.5 retina
TGGTGCCTCT (
7
)
3.9
0.0039
P0.5 retina
TTGAAAAAAA
(
15
)
3.9
0.0039
P0.5 retina
AATTACAAGC (
8
)
2
0.002
P0.5 retina
CAGGATTCCT
(
5
)
2
0.002
P0.5 retina
CTGCTGTGGA (
8
)
2
0.002
P0.5 retina
GGAAGGTCGG (
6
)
2
0.002
P0.5 retina
TGTGTGTGAG (
13
)
2
0.002
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
CAAAAAAAAA (
157
)
52.8
0.0528
P2.5 retina
TATAATCTGT
(
5
)
12.3
0.0123
P2.5 retina
TTTGGATGTT
(
8
)
8.8
0.0088
P2.5 retina
AATTACAAGC (
8
)
5.3
0.0053
P2.5 retina
TGGTGCCTCT (
7
)
5.3
0.0053
P2.5 retina
AATTAGAAGC
(
6
)
3.5
0.0035
P2.5 retina
ACCCTGTGAA (
7
)
3.5
0.0035
P2.5 retina
AATGAAGTTC
(
5
)
1.8
0.0018
P2.5 retina
AGGTCACCCT
(
6
)
1.8
0.0018
P2.5 retina
CACAAAAAAT
(
6
)
1.8
0.0018
P2.5 retina
CTGCTGTGGA (
8
)
1.8
0.0018
P2.5 retina
CTGTTTAGAT
(
8
)
1.8
0.0018
P2.5 retina
CTTCTTGAAT
(
7
)
1.8
0.0018
P2.5 retina
GGAAAATAAA (
15
)
1.8
0.0018
P2.5 retina
GTGGCATATA
(
13
)
1.8
0.0018
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
CAAAAAAAAA (
157
)
41.6
0.0416
P4.5 retina
TTTGGATGTT
(
8
)
17.8
0.0178
P4.5 retina
TATAATCTGT
(
5
)
11.9
0.0119
P4.5 retina
TTGAAAAAAA
(
15
)
7.9
0.0079
P4.5 retina
AATTACAAGC (
8
)
2
0.002
P4.5 retina
ACCCTGTGAA (
7
)
2
0.002
P4.5 retina
AGGTCACCCT
(
6
)
2
0.002
P4.5 retina
AGTCTGGAGC (
6
)
2
0.002
P4.5 retina
CAGGATTCCT
(
5
)
2
0.002
P4.5 retina
TGGTGCCTCT (
7
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
CAAAAAAAAA (
157
)
31.7
0.0317
P6.5 retina
TTTGGATGTT
(
8
)
13.3
0.0133
P6.5 retina
TATAATCTGT
(
5
)
10
0.01
P6.5 retina
TGGTGCCTCT (
7
)
5
0.005
P6.5 retina
AATTACAAGC (
8
)
3.3
0.0033
P6.5 retina
CTGTTTAGAT
(
8
)
3.3
0.0033
P6.5 retina
CTTTAACAAA
(
5
)
3.3
0.0033
P6.5 retina
ACATTAAAAG
(
7
)
1.7
0.0017
P6.5 retina
ACCCTGTGAA (
7
)
1.7
0.0017
P6.5 retina
AGGTCACCCT
(
6
)
1.7
0.0017
P6.5 retina
GTGGCATATA
(
13
)
1.7
0.0017
P6.5 retina
TGACCTTTGT
(
7
)
1.7
0.0017
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
AATTACAAGC (
8
)
13
0.013
P10.5 crx- retina
CAAAAAAAAA (
157
)
13
0.013
P10.5 crx- retina
TATAATCTGT
(
5
)
13
0.013
P10.5 crx- retina
TGGCCGGCTA
(
5
)
7.4
0.0074
P10.5 crx- retina
TTTGGATGTT
(
8
)
7.4
0.0074
P10.5 crx- retina
CAAAAAGGCA
(
6
)
3.7
0.0037
P10.5 crx- retina
AATGAAGTTC
(
5
)
1.9
0.0019
P10.5 crx- retina
AGGTCACCCT
(
6
)
1.9
0.0019
P10.5 crx- retina
CACAAAAAAT
(
6
)
1.9
0.0019
P10.5 crx- retina
CTGTTTAGAT
(
8
)
1.9
0.0019
P10.5 crx- retina
GTGGCATATA
(
13
)
1.9
0.0019
P10.5 crx- retina
TTGAAAAAAA
(
15
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
CAAAAAAAAA (
157
)
32.7
0.0327
P10.5 crx+ retina
TTTGGATGTT
(
8
)
23.1
0.0231
P10.5 crx+ retina
TATAATCTGT
(
5
)
15.4
0.0154
P10.5 crx+ retina
TGGCCGGCTA
(
5
)
5.8
0.0058
P10.5 crx+ retina
CTGTTTAGAT
(
8
)
3.8
0.0038
P10.5 crx+ retina
TGGTGCCTCT (
7
)
3.8
0.0038
P10.5 crx+ retina
AATGAAGTTC
(
5
)
1.9
0.0019
P10.5 crx+ retina
AATTACAAGC (
8
)
1.9
0.0019
P10.5 crx+ retina
AATTAGAAGC
(
6
)
1.9
0.0019
P10.5 crx+ retina
ACCCTGTGAA (
7
)
1.9
0.0019
P10.5 crx+ retina
CAAAAAGGCA
(
6
)
1.9
0.0019
P10.5 crx+ retina
CTTTAACAAA
(
5
)
1.9
0.0019
P10.5 crx+ retina
GTGGCATATA
(
13
)
1.9
0.0019
P10.5 crx+ retina
TGTGTGTGAG (
13
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
CAAAAAAAAA (
157
)
20.4
0.0204
Adult retinal
TGGCCGGCTA
(
5
)
7.4
0.0074
Adult retinal
CAGGATTCCT
(
5
)
5.6
0.0056
Adult retinal
AATGAAGTTC
(
5
)
1.9
0.0019
Adult retinal
AATTAGAAGC
(
6
)
1.9
0.0019
Adult retinal
CAAAAAGGCA
(
6
)
1.9
0.0019
Adult retinal
CTGCTGTGGA (
8
)
1.9
0.0019
Adult retinal
GGAAGGTCGG (
6
)
1.9
0.0019
Adult retinal
TATAATCTGT
(
5
)
1.9
0.0019
Adult retinal
TTGAAAAAAA
(
15
)
1.9
0.0019
Adult retinal
TTTGGATGTT
(
8
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
CAAAAAAAAA (
157
)
17.2
0.0172
ONL
TATAATCTGT
(
5
)
7.7
0.0077
ONL
TTTGGATGTT
(
8
)
5.7
0.0057
ONL
ACCCTGTGAA (
7
)
3.8
0.0038
ONL
TTGAAAAAAA
(
15
)
3.8
0.0038
ONL
AATGAAGTTC
(
5
)
1.9
0.0019
ONL
AGGTCACCCT
(
6
)
1.9
0.0019
ONL
AGTCTGGAGC (
6
)
1.9
0.0019
ONL
CACAAAAAAT
(
6
)
1.9
0.0019
ONL
CAGGATTCCT
(
5
)
1.9
0.0019
ONL
CTTTAACAAA
(
5
)
1.9
0.0019
ONL
GGAAGGTCGG (
6
)
1.9
0.0019
