Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.21961	Atp6ap1	ATPase, H+ transporting, lysosomal accessory protein 1	X	X 29.83 cM	54411
Gene Ontology	ATP binding | ATP biosynthesis | ATP synthesis coupled proton transport | extracellular space | hydrogen ion transporter activity | hydrogen-transporting ATP synthase activity, rotational mechanism | hydrogen-transporting ATPase activity, rotational mechanism | hydrolase activity | integral to membrane | proton transport | proton-transporting two-sector ATPase complex
Human Homolog	ATP6AP1[ATPase, H+ transporting, lysosomal accessory protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 67 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AACTTGAGGT 3.3 0.0033 Cb medulloblastoma GAGGATTCCA (4) 2.3 0.0023 Cb medulloblastoma GCTGTTGCTG (3) 2.3 0.0023 Cb medulloblastoma GTGGCTGGGG (7) 2.3 0.0023 P8 GC+1d culture AACTTGAGGT 3.4 0.0034 P8 GC+1d culture GCTGGTTGAT (2) 1.1 0.0011 P8 GC+SHH+1d culture ACACTGTCAC (3) 4.7 0.0047 P8 GC+SHH+1d culture ACACTGCCCA (2) 2.3 0.0023 3T3 fibroblasts GTGGCCTTGG (4) 10.5 0.0105 3T3 fibroblasts AACTTGAGGT 7 0.007 3T3 fibroblasts ACACTGCCCA (2) 7 0.007 E15 cortex ACACTGCCCA (2) 4.9 0.0049 P1 cortex AACTTGAGGT 9.1 0.0091 P1 cortex ACACTGCCCA (2) 4.5 0.0045 P1 cortex ACACTGTCAC (3) 4.5 0.0045 P1 cortex GAGGATTCCA (4) 4.5 0.0045 P1 cortex TGGTTGTCTC (4) 4.5 0.0045 Hypothalamus AACTTGAGGT 1.8 0.0018 Hypothalamus GAACGACTTG 1.8 0.0018 Hypothalamus GCTGGTTGAT (2) 1.8 0.0018 E12.5 retina ACACTGCCCA (2) 3.8 0.0038 E12.5 retina ACACTGTCAC (3) 1.9 0.0019 E12.5 retina GAGCTGGGTC (2) 1.9 0.0019 E14.5 retina ACACTGTCAC (3) 7.3 0.0073 E14.5 retina GAGGATTCCA (4) 1.8 0.0018 E14.5 retina GGGGGGCTGG (8) 1.8 0.0018 E14.5 retina GGTGGGCCTG (2) 1.8 0.0018 E16.5 retina ACACTGCCCA (2) 5.4 0.0054 E16.5 retina ACACTGTCAC (3) 1.8 0.0018 E18.5 retina AACTTGAGGT 1.8 0.0018 E18.5 retina ACACTGTCAC (3) 1.8 0.0018 E18.5 retina GAGCTGGGTC (2) 1.8 0.0018 E18.5 retina GGGGGGCTGG (8) 1.8 0.0018 E18.5 retina GGTGGGCCTG (2) 1.8 0.0018 P0.5 retina ACACTGCCCA (2) 2 0.002 P0.5 retina GGGGGGCTGG (8) 2 0.002 P0.5 retina TGGTTGTCTC (4) 2 0.002 P2.5 retina AACTTGAGGT 1.8 0.0018 P2.5 retina ACACTGCCCA (2) 1.8 0.0018 P2.5 retina ACACTGTCAC (3) 1.8 0.0018 P2.5 retina GCTGGTTGAT (2) 1.8 0.0018 P2.5 retina GGTGGGCCTG (2) 1.8 0.0018 P2.5 retina TGGTTGTCTC (4) 1.8 0.0018 P6.5 retina AACTTGAGGT 5 0.005 P6.5 retina GAGCTGGGTC (2) 3.3 0.0033 P6.5 retina TGGTTGTCTC (4) 3.3 0.0033 P6.5 retina ACACTGTCAC (3) 1.7 0.0017 P6.5 retina GCTGGTTGAT (2) 1.7 0.0017 P6.5 retina GCTGTTGCTG (3) 1.7 0.0017 P10.5 crx- retina AACTTGAGGT 5.6 0.0056 P10.5 crx- retina ACACTGCCCA (2) 1.9 0.0019 P10.5 crx- retina ACACTGTCAC (3) 1.9 0.0019 P10.5 crx- retina GCTGTTGCTG (3) 1.9 0.0019 P10.5 crx- retina GTGGCTGGGG (7) 1.9 0.0019 P10.5 crx+ retina ACACTGTCAC (3) 5.8 0.0058 P10.5 crx+ retina AACTTGAGGT 3.8 0.0038 P10.5 crx+ retina GAGCTGGGTC (2) 1.9 0.0019 P10.5 crx+ retina GTGGCTGGGG (7) 1.9 0.0019 Adult retinal AACTTGAGGT 5.6 0.0056 Adult retinal ACACTGCCCA (2) 3.7 0.0037 Adult retinal ACACTGTCAC (3) 1.9 0.0019 Adult retinal GAACGACTTG 1.9 0.0019 Adult retinal GCTGGTTGAT (2) 1.9 0.0019 Adult retinal GCTGTTGCTG (3) 1.9 0.0019 Adult retinal TGGTTGTCTC (4) 1.9 0.0019 ONL AACTTGAGGT 7.7 0.0077 ONL GGGGGGCTGG (8) 1.9 0.0019