Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.220333
Nfkbib
nuclear factor of kappa light chain gene enhancer in B-cells inhibitor, beta
7
18036
Gene Ontology
nucleus
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 121 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GCCTCCTCCC
(
4
)
21.2
0.0212
P8 Cb GC
TGCTGGGATG
(
2
)
8.2
0.0082
P8 Cb GC
CCTCCTCCCA
(
2
)
3.3
0.0033
P8 Cb GC
TGCTGGGAAG
(
8
)
3.3
0.0033
P8 Cb GC
GCTCCTCCCA (
7
)
1.6
0.0016
P8 Cb GC
GGGCCCCTGA
(
2
)
1.6
0.0016
Cb medulloblastoma
TGCTGGGATG
(
2
)
32.4
0.0324
Cb medulloblastoma
GCCTCCTCCC
(
4
)
18.5
0.0185
Cb medulloblastoma
GCTCCTCCCA (
7
)
9.2
0.0092
Cb medulloblastoma
GGGCCCCTGA
(
2
)
6.9
0.0069
Cb medulloblastoma
TGCTGGGAAA (
3
)
2.3
0.0023
Cb medulloblastoma
TGCTGGGAAG
(
8
)
2.3
0.0023
P8 GC+1d culture
GCCTCCTCCC
(
4
)
42.2
0.0422
P8 GC+1d culture
TGCTGGGATG
(
2
)
16
0.016
P8 GC+1d culture
TGCTGGGAAG
(
8
)
6.8
0.0068
P8 GC+1d culture
GGGCCCCTGA
(
2
)
5.7
0.0057
P8 GC+1d culture
CCTCCTCCCA
(
2
)
1.1
0.0011
P8 GC+1d culture
GCTCCTCCCA (
7
)
1.1
0.0011
P8 GC+SHH+1d culture
GCCTCCTCCC
(
4
)
43.3
0.0433
P8 GC+SHH+1d culture
TGCTGGGATG
(
2
)
26.9
0.0269
P8 GC+SHH+1d culture
TGCTGGGAAG
(
8
)
5.9
0.0059
P8 GC+SHH+1d culture
GGGCCCCTGA
(
2
)
3.5
0.0035
P8 GC+SHH+1d culture
GACCTTCTGG
(
5
)
1.2
0.0012
3T3 fibroblasts
GCCTCCTCCC
(
4
)
31.5
0.0315
3T3 fibroblasts
GTCATAGCTG (
590
)
10.5
0.0105
3T3 fibroblasts
TGCTGGGATG
(
2
)
7
0.007
3T3 fibroblasts
CCTCCTCCCA
(
2
)
3.5
0.0035
E15 cortex
GCCTCCTCCC
(
4
)
59.4
0.0594
E15 cortex
GGGCCCCTGA
(
2
)
9.9
0.0099
E15 cortex
TGCTGGGAAG
(
8
)
9.9
0.0099
E15 cortex
TGCTGGGATG
(
2
)
9.9
0.0099
E15 cortex
GACCTTCTGG
(
5
)
4.9
0.0049
E15 cortex
GCTCCTCCCA (
7
)
4.9
0.0049
E15 cortex
GTCATAGCTG (
590
)
4.9
0.0049
P1 cortex
GCCTCCTCCC
(
4
)
13.6
0.0136
P1 cortex
TGCTGGGATG
(
2
)
13.6
0.0136
P1 cortex
GGGCCCCTGA
(
2
)
4.5
0.0045
P1 cortex
TGCTGGGAAG
(
8
)
4.5
0.0045
Hypothalamus
GCCTCCTCCC
(
4
)
61.6
0.0616
Hypothalamus
TGCTGGGATG
(
2
)
14.5
0.0145
Hypothalamus
GGGCCCCTGA
(
2
)
7.2
0.0072
Hypothalamus
TGCTGGGAAG
(
8
)
7.2
0.0072
Hypothalamus
TGCTGGGAAA (
3
)
3.6
0.0036
Hypothalamus
GCCCTCCTCC (
11
)
1.8
0.0018
Hypothalamus
GCTCCTCCCA (
7
)
1.8
0.0018
Hypothalamus
TGCTGGGGAT
(
2
)
1.8
0.0018
E12.5 retina
GCCTCCTCCC
(
4
)
54.4
0.0544
E12.5 retina
TGCTGGGATG
(
2
)
22.5
0.0225
E12.5 retina
GGGCCCCTGA
(
2
)
3.8
0.0038
E12.5 retina
GCCTCATCCC
(
4
)
1.9
0.0019
E14.5 retina
GCCTCCTCCC
(
4
)
91.1
0.0911
E14.5 retina
TGCTGGGATG
(
2
)
21.9
0.0219
E14.5 retina
CCTCCTCCCA
(
2
)
1.8
0.0018
E14.5 retina
GACCTTCTGG
(
5
)
1.8
0.0018
E14.5 retina
GCCTCATCCC
(
4
)
1.8
0.0018
E14.5 retina
GCTCCTCCCA (
7
)
1.8
0.0018
E14.5 retina
TGCTGGGGAT
(
2
)
1.8
0.0018
E16.5 retina
GCCTCCTCCC
(
4
)
77.9
0.0779
E16.5 retina
TGCTGGGATG
(
2
)
30.8
0.0308
E16.5 retina
TGCTGGGAAG
(
8
)
3.6
0.0036
E16.5 retina
GCCCTCCTCC (
11
)
1.8
0.0018
E16.5 retina
GCTCCTCCCA (
7
)
1.8
0.0018
E16.5 retina
GGGCCCCTGA
(
2
)
1.8
0.0018
E16.5 retina
TGCTGGGGAT
(
2
)
1.8
0.0018
E18.5 retina
GCCTCCTCCC
(
4
)
85.5
0.0855
E18.5 retina
TGCTGGGATG
(
2
)
25.5
0.0255
E18.5 retina
TGCTGGGAAA (
3
)
1.8
0.0018
E18.5 retina
TGCTGGGAAG
(
8
)
1.8
0.0018
P0.5 retina
GCCTCCTCCC
(
4
)
39.3
0.0393
P0.5 retina
TGCTGGGATG
(
2
)
13.7
0.0137
P0.5 retina
TGCTGGGAAG
(
8
)
7.9
0.0079
P0.5 retina
GTCATAGCTG (
590
)
3.9
0.0039
P0.5 retina
GCTCCTCCCA (
7
)
2
0.002
P0.5 retina
GGGCCCCTGA
(
2
)
2
0.002
P2.5 retina
GCCTCCTCCC
(
4
)
45.8
0.0458
P2.5 retina
TGCTGGGATG
(
2
)
10.6
0.0106
P2.5 retina
CCCCTGCTGC
(
8
)
3.5
0.0035
P2.5 retina
TGCTGGGAAG
(
8
)
3.5
0.0035
P2.5 retina
AGCCCTTCCT
1.8
0.0018
P2.5 retina
AGGACTTTAA (
6
)
1.8
0.0018
P2.5 retina
GCCTCCCCCC
(
6
)
1.8
0.0018
P2.5 retina
GTCATAGCTG (
590
)
1.8
0.0018
P2.5 retina
TGCTGGGGAT
(
2
)
1.8
0.0018
P4.5 retina
GCCTCCTCCC
(
4
)
59.4
0.0594
P4.5 retina
TGCTGGGATG
(
2
)
27.7
0.0277
P4.5 retina
TGCTGGGAAG
(
8
)
4
0.004
P4.5 retina
CCCCTGCTGC
(
8
)
2
0.002
P4.5 retina
GCTCCTCCCA (
7
)
2
0.002
P4.5 retina
GTCATAGCTG (
590
)
2
0.002
P6.5 retina
GCCTCCTCCC
(
4
)
35
0.035
P6.5 retina
TGCTGGGATG
(
2
)
15
0.015
P6.5 retina
GCCTCCCCCC
(
6
)
3.3
0.0033
P6.5 retina
GTCATAGCTG (
590
)
3.3
0.0033
P6.5 retina
GCTCCTCCCA (
7
)
1.7
0.0017
P6.5 retina
GGGCCCCTGA
(
2
)
1.7
0.0017
P6.5 retina
TGCTGGGAAA (
3
)
1.7
0.0017
P6.5 retina
TGCTGGGAAG
(
8
)
1.7
0.0017
P10.5 crx- retina
GCCTCCTCCC
(
4
)
26
0.026
P10.5 crx- retina
TGCTGGGATG
(
2
)
13
0.013
P10.5 crx- retina
TGCTGGGAAG
(
8
)
11.1
0.0111
P10.5 crx- retina
GCTCCTCCCA (
7
)
1.9
0.0019
P10.5 crx- retina
GGGCCCCTGA
(
2
)
1.9
0.0019
P10.5 crx+ retina
GCCTCCTCCC
(
4
)
28.8
0.0288
P10.5 crx+ retina
TGCTGGGATG
(
2
)
15.4
0.0154
P10.5 crx+ retina
TGCTGGGAAG
(
8
)
11.5
0.0115
P10.5 crx+ retina
AGGACTTTAA (
6
)
3.8
0.0038
P10.5 crx+ retina
GCTCCTCCCA (
7
)
3.8
0.0038
P10.5 crx+ retina
AGCCCTTCCT
1.9
0.0019
P10.5 crx+ retina
GCCTCATCCC
(
4
)
1.9
0.0019
Adult retinal
GCCTCCTCCC
(
4
)
31.5
0.0315
Adult retinal
TGCTGGGATG
(
2
)
13
0.013
Adult retinal
TGCTGGGAAG
(
8
)
11.1
0.0111
Adult retinal
AGCCCTTCCT
1.9
0.0019
Adult retinal
GACCTTCTGG
(
5
)
1.9
0.0019
Adult retinal
GCCCTCCTCC (
11
)
1.9
0.0019
Adult retinal
GGGCCCCTGA
(
2
)
1.9
0.0019
Adult retinal
GTCATAGCTG (
590
)
1.9
0.0019
ONL
GCCTCCTCCC
(
4
)
9.6
0.0096
ONL
TGCTGGGAAG
(
8
)
7.7
0.0077
ONL
GTCATAGCTG (
590
)
5.7
0.0057
ONL
TGCTGGGATG
(
2
)
5.7
0.0057
